MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C13_LG52	CSIRO_D5chr13_56936161	Chr13_56936160	marker_locus	7.86 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_2708427	Chr05_2708426	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_3701395	Chr05_3701394	marker_locus	5.31 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_4081372	Chr05_4081371	marker_locus	10.73 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_5347153	Chr05_5347152	marker_locus	20.39 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_5655503	Chr05_5655502	marker_locus	22.83 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_5849868	Chr05_5849867	marker_locus	32.97 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_5039800	Chr05_5039799	marker_locus	39.19 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_5038582	Chr05_5038581	marker_locus	41.19 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_4404346	Chr05_4404346	marker_locus	47.9 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5Chr05_4271855	Chr05_4271854	marker_locus	49.43 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_3428138	Chr05_3428137	marker_locus	55.95 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_2395389	Chr05_2395389	marker_locus	62.73 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_1915359	Chr05_1915358	marker_locus	65.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_1785423	Chr05_1785423	marker_locus	65.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_1572439	Chr05_1572438	marker_locus	66.76 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_1171012	Chr05_1171011	marker_locus	69.71 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_1158369	Chr05_1158368	marker_locus	71.44 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_635260	Chr05_635259	marker_locus	74.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_368833	Chr05_368832	marker_locus	84.49 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_916567	Chr05_916566	marker_locus	89.88 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_58242802	Chr05_58242801	marker_locus	130.33 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_57943869	Chr05_57943868	marker_locus	137.03 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_9412612	Chr05_9412612	marker_locus	142.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_58740899	Chr05_58740898	marker_locus	146.1 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)