TM-1 x 3-79, RIL (2006)

Map Overview


Name	TM-1 x 3-79, RIL (2006)
Species	Gossypium hirsutum x barbadense
Population type	RIL
Source url	http://tropgenedb.cirad.fr/tropgene/JSP/index.jsp
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	TM-1
Paternal parent	3-79
Population size	186
Number of loci	433
Number of QTL	25
Number of linkage groups	57
Publication	[view all]
Contact	TropGene

Stock

Name

Type

Details

TM-1 x 3-79, RIL

population

Alias:	T3-RIL
Description:	genetic mapping
Population size:	186
Alias:	ctgpop_000059
Secondary id:	cdbpop_000059
Pedigree:	TM-1 / 3-79

Contact

Name

Details

TropGene

Country:

France

Publication


Year	Publications
2005	Park Y, Alabady M, Ulloa M, Sickler B, Wilkins T, Yu J, Stelly D, Kohel R, El-Shihy O, Cantrell R. Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred line cotton population. Molecular genetics and genomics : MGG. 2005; 274(4):428-441
2006	Frelichowski JJ, Palmer M, Main D, Tomkins J, Cantrell R, Stelly D, Yu J, Kohel R, Ulloa M. Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. Molecular genetics and genomics MGG. 2006; 275(5):479-491.

Map Loci

This map contains 433 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
TM-1 x 3-79, RIL (2006).chr.19	MUSB1155	musb1155	marker_locus	17.2 cM
TM-1 x 3-79, RIL (2006).chr.19/D08	BNL2865	BNL2865	marker_locus	0 cM
TM-1 x 3-79, RIL (2006).chr.19/D08	MUSB1056	MUSB1056	marker_locus	7.5 cM
TM-1 x 3-79, RIL (2006).chr.19/D08	CIR0165	CIR165	marker_locus	14.1 cM
TM-1 x 3-79, RIL (2006).chr.19/D08	BNL3452	BNL3452	marker_locus	19.6 cM
TM-1 x 3-79, RIL (2006).chr.19/D08	BNL2715	BNL2715	marker_locus	30.9 cM
TM-1 x 3-79, RIL (2006).chr.19/D08	BNL3020	BNL3020	marker_locus	43.6 cM
TM-1 x 3-79, RIL (2006).chr.19/D08	MUCS0517	MUCS517	marker_locus	59.6 cM
TM-1 x 3-79, RIL (2006).chr.19/D08	MUCS0585	MUCS585	marker_locus	60.4 cM
TM-1 x 3-79, RIL (2006).chr.1b	MUSS0161	MUSS161a	marker_locus	0 cM
TM-1 x 3-79, RIL (2006).chr.1b	MUCS0164	MUCS164a	marker_locus	2.6 cM
TM-1 x 3-79, RIL (2006).chr.1b	MUCS0164	MUCS164b	marker_locus	18.8 cM
TM-1 x 3-79, RIL (2006).chr.20	MUSB1048	MUSB1048	marker_locus	0 cM
TM-1 x 3-79, RIL (2006).chr.20	NAU1169	NAU1169	marker_locus	25.8 cM
TM-1 x 3-79, RIL (2006).chr.20b	MUSB1304	musb1304	marker_locus	0 cM
TM-1 x 3-79, RIL (2006).chr.20b	MUSS0096	MUSS096b	marker_locus	10.6 cM
TM-1 x 3-79, RIL (2006).chr.20b	JESPR0235	JESPR235	marker_locus	20.6 cM
TM-1 x 3-79, RIL (2006).chr.20b	BNL0169	BNL0169	marker_locus	25 cM
TM-1 x 3-79, RIL (2006).chr.20b	BNL0119	BNL0119	marker_locus	28.2 cM
TM-1 x 3-79, RIL (2006).chr.20b	MUSS0279	MUSS279	marker_locus	32.5 cM
TM-1 x 3-79, RIL (2006).chr.20b	MUSB0319	musb0319	marker_locus	36.5 cM
TM-1 x 3-79, RIL (2006).chr.20b	BNL0946	BNL0946	marker_locus	38.9 cM
TM-1 x 3-79, RIL (2006).chr.20b	MUSS0414	MUSS414	marker_locus	41.8 cM
TM-1 x 3-79, RIL (2006).chr.20b	MUSS0070	MUSS070	marker_locus	56.3 cM
TM-1 x 3-79, RIL (2006).chr.20b	MUSS0143	MUSS143	marker_locus	59.3 cM

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Map QTL

This map contains 25 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
TM-1 x 3-79, RIL (2006).chr02	qSL2.5.T3-ch2	QTL	40.1 cM	44.4 cM	-
TM-1 x 3-79, RIL (2006).chr02	qSL50.T3-ch2.1	QTL	45.8 cM	47.6 cM	-
TM-1 x 3-79, RIL (2006).chr02	qSL50.T3-ch2.2	QTL	54.7 cM	56.3 cM	-
TM-1 x 3-79, RIL (2006).chr03	qFEL.T3-ch3	QTL	18.8 cM	30.6 cM	-
TM-1 x 3-79, RIL (2006).chr03	qMIC.T3-ch3.1	QTL	18.8 cM	30.6 cM	-
TM-1 x 3-79, RIL (2006).chr03	qMIC.T3-ch3.2	QTL	75.4 cM	77.4 cM	-
TM-1 x 3-79, RIL (2006).chr03	qFS.T3-ch3	QTL	46.7 cM	49.9 cM	-
TM-1 x 3-79, RIL (2006).chr05	qMIC.T3-ch5	QTL	46.6 cM	48.6 cM	-
TM-1 x 3-79, RIL (2006).chr09	qSL2.5.T3-ch9	QTL	112.1 cM	114.1 cM	-
TM-1 x 3-79, RIL (2006).chr10	qSL50.T3-ch10	QTL	0 cM	4.6 cM	-
TM-1 x 3-79, RIL (2006).chr12	qMIC.T3-ch12	QTL	32.2 cM	40.5 cM	-
TM-1 x 3-79, RIL (2006).chr15	qFEL.T3-ch15	QTL	6.9 cM	9.4 cM	-
TM-1 x 3-79, RIL (2006).chr15	qFS.T3-ch15.1	QTL	6.9 cM	9.4 cM	-
TM-1 x 3-79, RIL (2006).chr15b	qFS.T3-ch15.2	QTL	19 cM	21.3 cM	-
TM-1 x 3-79, RIL (2006).chr15b	qFS.T3-ch15.3	QTL	27.6 cM	27.8 cM	-
TM-1 x 3-79, RIL (2006).chr17b	qMIC.T3-ch17	QTL	28.1 cM	30.1 cM	-
TM-1 x 3-79, RIL (2006).chr18b	qFEL.T3-ch18.1	QTL	17.8 cM	20.1 cM	-
TM-1 x 3-79, RIL (2006).chr18b	qFEL.T3-ch18.2	QTL	40.9 cM	42.9 cM	-
TM-1 x 3-79, RIL (2006).chr18b	qFS.T3-ch18.1	QTL	13.5 cM	16.7 cM	-
TM-1 x 3-79, RIL (2006).chr18b	qFS.T3-ch18.2	QTL	40 cM	42 cM	-
TM-1 x 3-79, RIL (2006).chr18b	qSL2.5.T3-ch18.1	QTL	13.5 cM	16.7 cM	-
TM-1 x 3-79, RIL (2006).chr18b	qSL2.5.T3-ch18.2	QTL	100.9 cM	102.9 cM	-
TM-1 x 3-79, RIL (2006).chr18c	qSL2.5.T3-ch18.3	QTL	5.8 cM	7.8 cM	-
TM-1 x 3-79, RIL (2006).chr18b	qSL50.T3-ch18.1	QTL	13.5 cM	16.7 cM	-
TM-1 x 3-79, RIL (2006).chr18c	qSL50.T3-ch18.2	QTL	5.8 cM	7.8 cM	-

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TM-1 x 3-79, RIL (2006)