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Map Overview
Name | TM-1 x 3-79, RIL (2006) |
Species | Gossypium hirsutum x barbadense
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Population type | RIL |
Source url | http://tropgenedb.cirad.fr/tropgene/JSP/index.jsp |
Genome group | AD |
Map type | genetic |
Map unit | cM |
Maternal parent | TM-1 |
Paternal parent | 3-79 |
Population size | 186 |
Number of loci | 433 |
Number of QTL | 25 |
Number of linkage groups | 57 |
Publication | [view all] |
Contact | TropGene
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Stock
Name | Type | Details |
TM-1 x 3-79, RIL | population | Alias: | T3-RIL | Description: | genetic mapping | Population size: | 186 | Alias: | ctgpop_000059 | Secondary id: | cdbpop_000059 | Pedigree: | TM-1 / 3-79 |
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Publication
Year | Publications |
2005 | Park Y, Alabady M, Ulloa M, Sickler B, Wilkins T, Yu J, Stelly D, Kohel R, El-Shihy O, Cantrell R. Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred line cotton population. Molecular genetics and genomics : MGG. 2005; 274(4):428-441 |
2006 | Frelichowski JJ, Palmer M, Main D, Tomkins J, Cantrell R, Stelly D, Yu J, Kohel R, Ulloa M. Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. Molecular genetics and genomics MGG. 2006; 275(5):479-491. |
Map Loci
This map contains 433 marker loci:
Linkage Group | Marker Name | Locus Name | Type | Position |
TM-1 x 3-79, RIL (2006).chr.11b | MUSB1000 | MUSB1000 | marker_locus | 89 cM |
TM-1 x 3-79, RIL (2006).chr.11b | MUSS0092 | MUSS092 | marker_locus | 95.2 cM |
TM-1 x 3-79, RIL (2006).chr.11b | CIR0203 | CIR203 | marker_locus | 97.9 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSB1307 | musb1307 | marker_locus | 0 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSB0303 | musb0303 | marker_locus | 14.8 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSB0799 | musb0799 | marker_locus | 22.9 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSB0846 | MUSB0846a | marker_locus | 23.6 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSB1242 | MUSB1242 | marker_locus | 24.9 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUCS0018 | MUCS018 | marker_locus | 25.6 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSS0018 | MUSS018 | marker_locus | 26 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSB0846 | MUSB0846b | marker_locus | 26.7 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSS0249 | MUSS249 | marker_locus | 27.8 cM |
TM-1 x 3-79, RIL (2006).chr.12 | NAU1237 | NAU1237 | marker_locus | 29.7 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSB0846 | MUSB0846c | marker_locus | 32.2 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSS0026 | MUSS026 | marker_locus | 40.5 cM |
TM-1 x 3-79, RIL (2006).chr.12 | MUSB1117 | MUSB1117 | marker_locus | 53.4 cM |
TM-1 x 3-79, RIL (2006).chr.12b | MUSB0497 | musb0497 | marker_locus | 0 cM |
TM-1 x 3-79, RIL (2006).chr.12b | BNL1045 | BNL1045 | marker_locus | 19.7 cM |
TM-1 x 3-79, RIL (2006).chr.12b | BNL1679 | BNL1679 | marker_locus | 26.8 cM |
TM-1 x 3-79, RIL (2006).chr.12b | BNL2709 | BNL2709 | marker_locus | 31.4 cM |
TM-1 x 3-79, RIL (2006).chr.14 | BNL3034 | BNL3034 | marker_locus | 0 cM |
TM-1 x 3-79, RIL (2006).chr.14 | BNL2882 | BNL2882 | marker_locus | 8.8 cM |
TM-1 x 3-79, RIL (2006).chr.14 | MUSB0337 | MUSB0337 | marker_locus | 16.6 cM |
TM-1 x 3-79, RIL (2006).chr.14 | BNL3502 | BNL3502 | marker_locus | 21.8 cM |
TM-1 x 3-79, RIL (2006).chr.14 | MUSS0233 | MUSS233 | marker_locus | 31.7 cM |
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Map QTL
This map contains 25 QTL:
Linkage Group | Name | Type | Start | Stop | Peak |
TM-1 x 3-79, RIL (2006).chr02 | qSL2.5.T3-ch2 | QTL | 40.1 cM | 44.4 cM | - |
TM-1 x 3-79, RIL (2006).chr02 | qSL50.T3-ch2.1 | QTL | 45.8 cM | 47.6 cM | - |
TM-1 x 3-79, RIL (2006).chr02 | qSL50.T3-ch2.2 | QTL | 54.7 cM | 56.3 cM | - |
TM-1 x 3-79, RIL (2006).chr03 | qFEL.T3-ch3 | QTL | 18.8 cM | 30.6 cM | - |
TM-1 x 3-79, RIL (2006).chr03 | qMIC.T3-ch3.1 | QTL | 18.8 cM | 30.6 cM | - |
TM-1 x 3-79, RIL (2006).chr03 | qMIC.T3-ch3.2 | QTL | 75.4 cM | 77.4 cM | - |
TM-1 x 3-79, RIL (2006).chr03 | qFS.T3-ch3 | QTL | 46.7 cM | 49.9 cM | - |
TM-1 x 3-79, RIL (2006).chr05 | qMIC.T3-ch5 | QTL | 46.6 cM | 48.6 cM | - |
TM-1 x 3-79, RIL (2006).chr09 | qSL2.5.T3-ch9 | QTL | 112.1 cM | 114.1 cM | - |
TM-1 x 3-79, RIL (2006).chr10 | qSL50.T3-ch10 | QTL | 0 cM | 4.6 cM | - |
TM-1 x 3-79, RIL (2006).chr12 | qMIC.T3-ch12 | QTL | 32.2 cM | 40.5 cM | - |
TM-1 x 3-79, RIL (2006).chr15 | qFEL.T3-ch15 | QTL | 6.9 cM | 9.4 cM | - |
TM-1 x 3-79, RIL (2006).chr15 | qFS.T3-ch15.1 | QTL | 6.9 cM | 9.4 cM | - |
TM-1 x 3-79, RIL (2006).chr15b | qFS.T3-ch15.2 | QTL | 19 cM | 21.3 cM | - |
TM-1 x 3-79, RIL (2006).chr15b | qFS.T3-ch15.3 | QTL | 27.6 cM | 27.8 cM | - |
TM-1 x 3-79, RIL (2006).chr17b | qMIC.T3-ch17 | QTL | 28.1 cM | 30.1 cM | - |
TM-1 x 3-79, RIL (2006).chr18b | qFEL.T3-ch18.1 | QTL | 17.8 cM | 20.1 cM | - |
TM-1 x 3-79, RIL (2006).chr18b | qFEL.T3-ch18.2 | QTL | 40.9 cM | 42.9 cM | - |
TM-1 x 3-79, RIL (2006).chr18b | qFS.T3-ch18.1 | QTL | 13.5 cM | 16.7 cM | - |
TM-1 x 3-79, RIL (2006).chr18b | qFS.T3-ch18.2 | QTL | 40 cM | 42 cM | - |
TM-1 x 3-79, RIL (2006).chr18b | qSL2.5.T3-ch18.1 | QTL | 13.5 cM | 16.7 cM | - |
TM-1 x 3-79, RIL (2006).chr18b | qSL2.5.T3-ch18.2 | QTL | 100.9 cM | 102.9 cM | - |
TM-1 x 3-79, RIL (2006).chr18c | qSL2.5.T3-ch18.3 | QTL | 5.8 cM | 7.8 cM | - |
TM-1 x 3-79, RIL (2006).chr18b | qSL50.T3-ch18.1 | QTL | 13.5 cM | 16.7 cM | - |
TM-1 x 3-79, RIL (2006).chr18c | qSL50.T3-ch18.2 | QTL | 5.8 cM | 7.8 cM | - |
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