BNL2709, BNL2709 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2709
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2709_orig
Source Typegenomic
Repeat Motif(AG)26
PCR ConditionAnnealing temperature: 55
Primer 1BNL2709_F: AGTGGACAAACAATCTTTTTGG
Primer 2BNL2709_R: ACATAAGGAAAGGAACAAGAAGC
PolymorphismP_ BNL2709
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A12chromosomeA12:88014075..88014210 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018213.1chromosomeCM018213.1:85041359..85041480 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:15321237..15321400 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
scaffold1108.1supercontigscaffold1108.1:499428..499568 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A12chromosomeA12:74092765..74092903 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A12chromosomeGhir_A12:92687321..92687459 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A12chromosomeA12:90779392..90779528 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A12chromosomeA12:87928818..87928956 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
At12chromosomeAt12:79167621..79167740 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold853supercontigscaffold853:852159..852278 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A12chromosomeGbar_A12:87654724..87654843 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A12chromosomeA12:87009336..87009457 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017647.1chromosomeCM017647.1:91685418..91685533 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017699.1chromosomeCM017699.1:87492301..87492447 -Gossypium darwinii (AD5) genome HGS_v1.1
A12chromosomeA12:94222151..94222287 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr12chromosomeChr12:102023017..102023182 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr08chromosomeChr08:31465755..31465935 -Gossypium lobatum (D7) genome ISU_v1
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2709_origBNL2709_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A123.27BNL2709View
2TM-1 x 3-79, RIL (2006)AD_ch12_At.12N/A31.4BNL2709View
3TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A80.82BNL2709View
4Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A44.1BNL2709View
5CCRI-36 x Hai-7124, F2 (2007)AD_ch12_At.12N/A99.3BNL2709View
6AD-genome wide Reference Map (2009)AD_ch12_At.12N/A93BNL2709View
7TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A80.8BNL2709View
8TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch12_At.12N/A85.5BNL2709View
9Emian-22 x 3-79, BC1 (2015)AD_ch12_At.12N/A101.4BNL2709View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A96.6BNL2709View
11SG 747 x Giza 75, BIL (2013)AD_ch12_At.12N/A98.6BNL2709View
12Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A41BNL2709View
13Handan-208 x Pima-90, F2:3 (2007)AD_ch22_Dt.04N/A62.3BNL2709*View
14TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A80.82BNL2709View
Sequence
>BNL2709 ID=BNL2709; Name=BNL2709; organism=Gossypium hirsutum; type=genetic_marker; length=141bp
AGTGGACAAACAATCTTTTTGGAGAGATTTTTTTCTTAGAAAAAAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAG
AAGATATCNTGTAAAATAGCTTCTTGTTCCTTTCCTTATGT