MUSS0249, MUSS0249 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0249
AliasMUSS249
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTTC(4)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS249_F: AATTAACCCTTCTTTTCCCCC
Primer 2MUSS249_R: ATCCGCAAACTTGTTCAACC
Product Length296
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:24709485..24709780 .Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1CottonGen marker alignment to genome using primer sequences
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch12_At.12N/A151muss0249View
2TM-1 x 3-79, RIL (2006)AD_ch12_At.12N/A27.8MUSS249View
3TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A50.94MUSS249View
4TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A50.9MUSS249View
5TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A50.94MUSS249View