MUSS0026, MUSS0026 (genetic_marker) Gossypium arboreum

Marker Overview


Name	MUSS0026
Alias	MUSS026
Genbank ID	N/A
Type	SSR
Species	Gossypium arboreum
Germplasm	AKA 8401
Source Type	EST
Repeat Motif	AT(17)
PCR Condition	Annealing temperature: 55
Primer 1	MUSS026_F: ACACGACTACATTTATCCGTTGG
Primer 2	MUSS026_R: GAAGAAGCATGATGTTTGAGATCC
Product Length	131
Polymorphism	P_ MUSS0026
Contact	Ulloa, Mauricio
Comment	Primer data obtained in 2007-11

Contact

Name

Details

Ulloa, Mauricio

Description:	Breeding, genetics, and Genomics
First name:	Mauricio
Last name:	Ulloa
Title:	Research Geneticist
Institution:	USDA-ARS, W.I.C.S., Res. Unit
Address:	17053 N. Shafter Ave., Shafter, California 93263
Country:	United States
Email:	mauricio.ulloa@usda.gov
Phone:	661-746-8009
Fax:	746-746-1619
Keywords:	Breeding and Genomics
Last update:	27-Apr-2010

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A12	chromosome	A12:11169053..11169163 -
CM018213.1	chromosome	CM018213.1:10677119..10677231 -
Chr12_CRI-A2_v1.0.a1	chromosome	Chr12_CRI-A2_v1.0.a1:96027451..96027581 +
D10_12	chromosome	D10_12:6183907..6184027 -
At_chr8	chromosome	At_chr8:72289194..72289302 -
A12	chromosome	A12:10733258..10733368 -
Ghir_D12	chromosome	Ghir_D12:8448040..8448150 -
Ghir_A12	chromosome	Ghir_A12:10955020..10955130 -
A12	chromosome	A12:10503200..10503310 -
A12	chromosome	A12:10940537..10940645 -
A12	chromosome	A12:10924215..10924323 -
scaffold5653	supercontig	scaffold5653:165918..166028 +
scaffold1462	supercontig	scaffold1462:270624..270736 +
scaffold1462	supercontig	scaffold1462:274968..275078 +
Gbar_D12	chromosome	Gbar_D12:8191466..8191576 -
Gbar_A12	chromosome	Gbar_A12:10957782..10957894 -
A12	chromosome	A12:10636835..10636947 -
CM017621.1	chromosome	CM017621.1:10616163..10616271 -
CM017647.1	chromosome	CM017647.1:11203172..11203282 -
CM017699.1	chromosome	CM017699.1:10595830..10595942 -
A12	chromosome	A12:10985641..10985751 -
Chr12	chromosome	Chr12:11331706..11331826 -
Chr12	chromosome	Chr12:11193325..11193455 -
B_12	chromosome	B_12:11887389..11887497 -
Chr08	chromosome	Chr08:8323902..8324026 -
Chr08	chromosome	Chr08:8468270..8468398 -

Germplasm


Stock Name	Type
AKA 8401	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch12_At.12	N/A	56.76	MUSS026	View
2	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch12_At.12	N/A	112.21	MUSS026	View
3	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch12_At.12	N/A	64.79	MUSS026	View
4	TM-1 x 3-79, RIL (2006)	AD_ch12_At.12	N/A	40.5	MUSS026	View
5	TM-1 x 3-79, RIL (2012)	AD_ch12_At.12	N/A	39.67	MUSS026	View
6	Yumian-1 x T586, F2:7 (2008)	AD_ch12_At.12	N/A	21.3	MUSS026	View
7	Yumian-1 x T586, RIL (2006)	AD_ch12_At.12	N/A	21.8	MUSS026	View
8	DH962 x Jinmian-6, F2 (2009)	AD_ch12_At.12	N/A	0	MUSS026	View
9	DH962 x Jinmian-6, F2 (2009)	AD_ch12_At.12	N/A	0	MUSS026	View
10	Yumian-1 x T586, RIL (2015)	AD_ch12_At.12	N/A	37.6	MUSS026	View
11	DH962 X Ji Mian 5, F2 (2015)	AD_ch12_At.12	N/A	12.66	MUSS026	View
12	TM-1 x 3-79, RIL (2014)	AD_ch12_At.12	N/A	39.7	MUSS026	View
13	DH962 x Ji Mian 5, RIL (2015)	AD_ch12_At.12	N/A	9.9	MUSS026	View
14	AD-genome wide Reference Map (2009)	AD_ch12_At.12	N/A	204	muss0026	View
15	Yumian-1 x T586, RIL (2009)	AD_ch12_At.12	N/A	22.9	MUSS026/120t(C12)	View
16	TM-1 x 3-79, RIL (2012.v3)	AD_ch12_At.12	N/A	39.67	MUSS026	View

Sequence

>MUSS0026 ID=MUSS0026; Name=MUSS0026; organism=Gossypium arboreum; type=genetic_marker; length=131bp
ACACGACTACATTTATCCGTTGGTATTTACTTTTCTAGCTCATATATATA
TATATATATATATATATATATATATACAGATCGTGATTACTTCAATATCT
TAGCCAGGGATCTCAAACATCATGCTTCTTC

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MUSS0026, MUSS0026 (genetic_marker) Gossypium arboreum