MUCS0585, MUCS0585 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0585
AliasMUCS585
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifCATA(2)TTATG(2)
PCR ConditionAnnealing temperature: 55
Primer 1MUCS585_F: GCAGAGACACAAGAAATCAATCC
Primer 2MUCS585_R: TGCTGACGACGAGTATGAGG
Product Length183
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold4867supercontigscaffold4867:35355..35537 .Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1CottonGen marker alignment to genome using primer sequences
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A60.17MUCS585View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch19_Dt.05N/A23.52MUCS585View
3TM-1 x 3-79, RIL (2006)AD_ch19_Dt.05N/A60.4MUCS585View
4TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A39.94MUCS585View
5TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A145.5MUCS585View
6AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A321mucs0585View
7TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A145.47MUCS585View