MUSB1155, MUSB1155 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1155
Genbank IDDX533025
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX533025.2
Source TypeEST
Repeat Motif(TA)8
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1155_F: GCCCTTGTACTTAGTCAATGCCG
Primer 2MUSB1155_R: ACACACAAGCTGACGGTTGG
Product Length327
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1155
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX533025
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:180337..180663 +
scaffold_86supercontigscaffold_86:172212..172533 +
CM018202.1chromosomeCM018202.1:74717207..74717533 +
CM018202.1chromosomeCM018202.1:74709082..74709403 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:69384665..69385015 +
Dt_chr9chromosomeDt_chr9:11372577..11372903 -
Dt_chr9chromosomeDt_chr9:11380707..11381028 -
scaffold4718supercontigscaffold4718:350716..351042 +
scaffold4718supercontigscaffold4718:342591..342912 +
Ghir_A01chromosomeGhir_A01:78442207..78442532 +
Ghir_A01chromosomeGhir_A01:78434085..78434406 +
A01chromosomeA01:79030899..79031225 +
A01chromosomeA01:79022774..79023095 +
A01chromosomeA01:77846170..77846496 +
A01chromosomeA01:77838045..77838366 +
A01chromosomeA01:74767945..74768271 +
A01chromosomeA01:74759820..74760141 +
scaffold3960supercontigscaffold3960:242512..242846 +
scaffold3960supercontigscaffold3960:240821..241155 +
scaffold2682supercontigscaffold2682:188825..189151 -
scaffold2682supercontigscaffold2682:197993..198314 -
scaffold2682supercontigscaffold2682:196955..197276 -
Gbar_A01chromosomeGbar_A01:76774527..76774853 +
Gbar_A01chromosomeGbar_A01:76766402..76766723 +
A01chromosomeA01:76787803..76788129 +
A01chromosomeA01:76779678..76779999 +
CM017610.1chromosomeCM017610.1:75071106..75071426 +
CM017610.1chromosomeCM017610.1:75062981..75063302 +
CM017688.1chromosomeCM017688.1:73387812..73388140 +
A01chromosomeA01:80033091..80033417 +
A01chromosomeA01:80024966..80025287 +
Chr01chromosomeChr01:89133426..89133747 -
Chr02chromosomeChr02:32856491..32856841 -
Chr_02chromosomeChr_02:30140995..30141322 -
F01chromosomeF01:44937962..44939180 +
F01chromosomeF01:44921998..44922317 +
F01chromosomeF01:44939756..44940075 +
Chr01chromosomeChr01:40726530..40726861 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX533025.2DX533025.2Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A27musb1155View
2TM-1 x 3-79, RIL (2006)AD_ch19_Dt.05N/A17.2musb1155View
3TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A129.35musb1155View
4TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A57.3musb1155View
5TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A57.27MUSB1155View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A192.8MUSB1155View
Sequence
>MUSB1155 ID=MUSB1155; Name=MUSB1155; organism=Gossypium hirsutum; type=genetic_marker; length=327bp
GCCCTTGTACTTAGTCAATGCCGCAATTTAGTCAAGTAAGTTTGTATGTT
TAAATAATATTTTAATGTTATATATATATATATATGTTATTGTGTAACTT
ATCGTGTAATGAACGATGGAAATCGAACGACGTTTCAACGATTATCGAGC
CCCTTTTGAACCTTAGGAATATATAGAATACCAATGACATGTCATTAGGG
TTACAATGTTTCGGGTGCTGGTCCTGAATGTCCTACCGATGGCTAAGTTC
CGACATTTGTTGTGGATACTCGTCATCTTGTATGAGCGGCATCGTGTAGC
TTACATTCCAACCGTCAGCTTGTGTGT