Pima S-7 x Empire, F2 (2007)

Map Overview


Name	Pima S-7 x Empire, F2 (2007)
Species	Gossypium barbadense x hirsutum
Software	MapMaker
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Paternal parent	Pima S-7
Population size	108-150
Number of loci	254
Number of QTL	13
Number of linkage groups	30
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Pima S-7 x Empire, F2

population

Alias:	PE-F2
Description:	genetic mapping
Population size:	108-150
Secondary id:	cdbpop_000031

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
1994	Reinisch A, Dong J, Brubaker C, Stelly D, Wendel J, Paterson A. A detailed RFLP map of cotton, Gossypium hirsutum X Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics. 1994 Nov; 138(3):829-847.
1998	Wright R, Thaxton P, El-Zik K, Paterson A. D-subgenome bias of Xcm resistance genes in tetraploid gossypium (cotton) suggests that polyploid formation has created novel avenues for evolution. Genetics. 1998 Aug; 149(4):1987-1996
1999	Wright R, Thaxton P, El-Zik K, Paterson A. Molecular mapping of genes affecting pubescence of cotton. Journal of heredity. 1999 Jan/Feb; 90(1):215-219.

Map Loci

This map contains 254 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Pima S-7 x Empire, F2 (2007).chr19/lgD08.1	A1701	A1701	marker_locus	37.6 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.1	PXP2-41	PXP2-41	marker_locus	37.6 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.1	pAR0137	pAR0137b	marker_locus	50 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.1	G1219	G1219	marker_locus	62 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.1	M16-150	M16-150	marker_locus	64.4 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.1	pAR0125	pAR0125	marker_locus	72.1 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.2	pVNC128	PVNC128	marker_locus	0 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.2	pAR0954	pAR0954	marker_locus	4.1 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.2	P03-04	P03-04	marker_locus	12.1 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.2	G1112	G1112	marker_locus	14.8 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.3	A1429	A1429	marker_locus	0 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.3	pAR0377	pAR0377	marker_locus	3.8 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.3	pAR0610	pAR0610	marker_locus	3.8 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.3	pAR03-37	pAR3-37	marker_locus	5.6 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.3	pAR03-41	pAR3-41	marker_locus	28.4 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.3	pAR1005	pAR1005	marker_locus	42.3 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.3	pGH559	pGH559d	marker_locus	57.3 cM
Pima S-7 x Empire, F2 (2007).chr19/lgD08.3	pGH510	pGH510	marker_locus	62.3 cM
Pima S-7 x Empire, F2 (2007).chr20	G1058	G1058a	marker_locus	0 cM
Pima S-7 x Empire, F2 (2007).chr20	P05-57	P05-57	marker_locus	0 cM
Pima S-7 x Empire, F2 (2007).chr20	pVNC163	PVNC163b	marker_locus	2.4 cM
Pima S-7 x Empire, F2 (2007).chr20	A1695	A1695	marker_locus	10.8 cM
Pima S-7 x Empire, F2 (2007).chr20	pAR0788	pAR0788a	marker_locus	19 cM
Pima S-7 x Empire, F2 (2007).chr20	pAR0138	pAR0138a	marker_locus	20.8 cM
Pima S-7 x Empire, F2 (2007).chr20	pGH597	PGH597	marker_locus	20.8 cM

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Map QTL

This map contains 13 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Pima S-7 x Empire, F2 (2007).chr05	qBBR.PE-ch5	QTL	96.5 cM	106.9 cM	-
Pima S-7 x Empire, F2 (2007).chr07	qDTL.PE-ch7	QTL	130.5 cM	145.4 cM	-
Pima S-7 x Empire, F2 (2007).chr21/lgD02	qBBR.PE-ch21	QTL	20.2 cM	27.5 cM	-
Pima S-7 x Empire, F2 (2007).chr23	qDTL.PE-ch23	QTL	76.1 cM	81 cM	-
Pima S-7 x Empire, F2 (2007).chr25	qDTL.PE-ch25.2	QTL	0 cM	5.2 cM	-
Pima S-7 x Empire, F2 (2007).chr01	qDTL.PE-ch1	QTL	8 cM	13.2 cM	-
Pima S-7 x Empire, F2 (2007).chr06	qDTL.PE-ch6.1	QTL	44.9 cM	54.5 cM	-
Pima S-7 x Empire, F2 (2007).chr06	qDTL.PE-ch6.2	QTL	46.5 cM	88.5 cM	-
Pima S-7 x Empire, F2 (2007).chr06	qDTL.PE-ch6.3	QTL	68.1 cM	78 cM	-
Pima S-7 x Empire, F2 (2007).chr14	qBBR.PE-ch14.2	QTL	69 cM	89.5 cM	-
Pima S-7 x Empire, F2 (2007).chr14	qBBR.PE-ch14.1	QTL	86.3 cM	93.7 cM	-
Pima S-7 x Empire, F2 (2007).chr20	qBBR.PE-ch20	QTL	37 cM	45.8 cM	-
Pima S-7 x Empire, F2 (2007).chr25	qDTL.PE-ch25.1	QTL	0 cM	4.9 cM	-

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Pima S-7 x Empire, F2 (2007)