A1701, A1701 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1701
Genbank IDCK640443
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640443
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:27897190..27897411 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:26785668..26785885 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:27276307..27276528 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:36125467..36125688 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:24744068..24744289 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:26706670..26706891 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:26722136..26722357 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:27627034..27627255 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:26695877..26696098 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4539supercontigscaffold4539:472000..472217 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:25550684..25550901 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:27143666..27143883 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:27145286..27145507 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:27431714..27431935 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:26817076..26817297 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:28083366..28083587 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:28470826..28471047 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:27653122..27653343 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch05_At.05N/A105.1A1701aView
2Palmeri x K-101, F2 (2007)AD_ch05_At.05N/A126.1A1701aView
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch05_At.05N/A170.4A1701aView
4CAMD-E x Seaberry, F2 (1998)AD_ch19_Dt.05N/A185A1701bView
5Palmeri x K-101, F2 (2007)AD_ch19_Dt.05N/A140.3A1701bView
6CAMD-E x Seaberry, F2 (1998)AD_ch19_Dt.05N/A41.4A1701cView
7Guazuncho-2 x VH8-4602, consensus (2009)AD_ch05_At.05N/A54.9A1701View
8Pima S-7 x Empire, F2 (2007)AD_ch19_Dt.05N/A37.6A1701View
9AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A250A1701View
10AD-genome wide Reference Map (2009)AD_ch05_At.05N/A167A1701View
Sequence
>A1701 ID=A1701; Name=A1701; organism=Gossypium herbaceum; type=genetic_marker; length=222bp
ACCCTGTCCCTCCAATTCTTCAAGTGAATTCATCAATCCAATCATGTAAA
CTCGTCCAAAAAACTTGTGAAAGGAATTCTGGAATGCACTTTGACTACTG
CACAACTTCTAGGAATATTATTCTGGTGGTAAGTTTTTTGTAAGGGTTGC
GTTTGCTTATTAAATTTTGTCAGTGGGAAGCAGTGAATGAGATAGTGATA
AATGTGCAAAGAATCTGTAAGC