VIR-5850

Germplasm Overview


Name	VIR-5850
Alias	PI 694603 [view all 6]
GRIN ID	PI 694603
Type	Breeding Germplasm
Species	Gossypium hirsutum
Description	N/A
Origin Country	N/A
Origin Detail	N/A
Pedigree	N/A
Maternal Parent	N/A
Paternal Parent	N/A
Maternal Parent of	N/A
Paternal Parent of	N/A
Phenotypic Data	[view all 55]
SSR Genotype Data	[view all 104]
SNP Genotype Data	[view all 63056]
Map	N/A
DNA Library	N/A
Sequence	N/A
Comments	N/A
Reference	N/A

Alias


Synonym
PAK-22
SA 3232
SA-3232
VIR-5850 PAK-22
Pak-22 Vir-5850
PI 694603

Image


File Name	Legend	Dataset
SA-3232_CS12-3030_IMG_4754_L.jpg	[SA-3232] leaf, College Station Plot# 3029, 2012	NCGC digital imaging (College Station, 2012)
SA-3232_CS12-3030_MG_3647_LB.jpg	[SA-3232] leaf close up of the back surface, College Station Plot# 3030, 2012	NCGC digital imaging (College Station, 2012)
SA-3232_CS12-3030_MG_4172_F.jpg	[SA-3232] flower, College Station Plot# 3030, 2012	NCGC digital imaging (College Station, 2012)
SA-3232_CS12-3030_MG_4173_FO.jpg	[SA-3232] flower open, College Station Plot# 3030, 2012	NCGC digital imaging (College Station, 2012)
SA-3232_CS12-3030_MG_7266_B.jpg	[SA-3232] green boll, College Station Plot# 3030, 2012	NCGC digital imaging (College Station, 2012)
SA-3232_CS12-3030_MG_7267_BO.jpg	[SA-3232] boll open, College Station Plot# 3030, 2012	NCGC digital imaging (College Station, 2012)
SA-3232_CS12-3030_MG_7268_BN.jpg	[SA-3232] boll showing nectaries, College Station Plot# 3030, 2012	NCGC digital imaging (College Station, 2012)

Phenotypic Data

Total 55 trait scores

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#	Dataset	Descriptor	Value	Environment	Plot
1	NCGC germplasm evaluation, CS12	boll color	green	US_TX_CS_2012	3030
2	NCGC germplasm evaluation, CS12	boll gossypol glands	heavy	US_TX_CS_2012	3030
3	NCGC germplasm evaluation, CS12	boll nectaries	reduced	US_TX_CS_2012	3030
4	NCGC germplasm evaluation, CS12	boll pitting	smooth	US_TX_CS_2012	3030
5	NCGC germplasm evaluation, CS12	boll point	moderately pointed	US_TX_CS_2012	3030
6	NCGC germplasm evaluation, CS12	boll shape	oval	US_TX_CS_2012	3030
7	NCGC germplasm evaluation, CS12	boll size	medium	US_TX_CS_2012	3030
8	NCGC germplasm evaluation, CS12	bract color	green	US_TX_CS_2012	3030
9	NCGC germplasm evaluation, CS12	bract nectaries	present	US_TX_CS_2012	3030
10	NCGC germplasm evaluation, CS12	bract teeth size	medium	US_TX_CS_2012	3030
11	NCGC germplasm evaluation, CS12	bract type	normal	US_TX_CS_2012	3030
12	NCGC germplasm evaluation, CS12	canopy type	typical	US_TX_CS_2012	3030
13	NCGC germplasm evaluation, CS12	leaf color	green	US_TX_CS_2012	3030
14	NCGC germplasm evaluation, CS12	leaf gossypol glands	medium	US_TX_CS_2012	3030
15	NCGC germplasm evaluation, CS12	leaf shape	normal	US_TX_CS_2012	3030
16	NCGC germplasm evaluation, CS12	leaf size	medium	US_TX_CS_2012	3030
17	NCGC germplasm evaluation, CS12	lint color	white	US_TX_CS_2012	3030
18	NCGC germplasm evaluation, CS12	petal color	cream	US_TX_CS_2012	3030
19	NCGC germplasm evaluation, CS12	petal spot	none	US_TX_CS_2012	3030
20	NCGC germplasm evaluation, CS12	plant shape	normal	US_TX_CS_2012	3030
21	NCGC germplasm evaluation, CS12	plot maturity	more than half open	US_TX_CS_2012	3030
22	NCGC germplasm evaluation, CS12	pollen color	yellow	US_TX_CS_2012	3030
23	NCGC germplasm evaluation, CS12	population homogeneity	uniform	US_TX_CS_2012	3030
24	NCGC germplasm evaluation, CS12	seed fuzz grade	high	US_TX_CS_2012	3030
25	NCGC germplasm evaluation, CS12	stem color	sun red	US_TX_CS_2012	3030

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Ssr Genotype Data

Total 104 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	NCGC_SNTD_SSR_genotype_2015	dpl0094	genetic_marker	197\|243	dpl0094_197; dpl0094_243
2	NCGC_SNTD_SSR_genotype_2015	dpl0520	genetic_marker	187\|195	dpl0520_187; dpl0520_195
3	NCGC_SNTD_SSR_genotype_2015	stv0023	genetic_marker	140\|145	stv0023_140; stv0023_145
4	NCGC_SNTD_SSR_genotype_2015	bnl2496	genetic_marker	143\|154	bnl2496_143; bnl2496_154
5	NCGC_SNTD_SSR_genotype_2015	bnl0569	genetic_marker	135\|137	bnl0569_135; bnl0569_137
6	NCGC_SNTD_SSR_genotype_2015	cir0307	genetic_marker	177\|177	cir0307_177; cir0307_177
7	NCGC_SNTD_SSR_genotype_2015	bnl1417	genetic_marker	97\|97	bnl1417_97; bnl1417_97
8	NCGC_SNTD_SSR_genotype_2015	cir0203	genetic_marker	257\|257	cir0203_257; cir0203_257
9	NCGC_SNTD_SSR_genotype_2015	dpl0600	genetic_marker	168\|168	dpl0600_168; dpl0600_168
10	NCGC_SNTD_SSR_genotype_2015	tmb0514	genetic_marker	193\|197	tmb0514_193; tmb0514_197
11	NCGC_SNTD_SSR_genotype_2015	bnl4030	genetic_marker	114\|114	bnl4030_114; bnl4030_114
12	NCGC_SNTD_SSR_genotype_2015	bnl4071	genetic_marker	213\|239	bnl4071_213; bnl4071_239
13	NCGC_SNTD_SSR_genotype_2015	jespr0008	genetic_marker	273\|273	jespr0008_273; jespr0008_273
14	NCGC_SNTD_SSR_genotype_2015	tmb0382	genetic_marker	179\|179	tmb0382_179; tmb0382_179
15	NCGC_SNTD_SSR_genotype_2015	bnl0387	genetic_marker	204\|212	bnl0387_204; bnl0387_212
16	NCGC_SNTD_SSR_genotype_2015	jespr0300	genetic_marker	198\|207	jespr0300_198; jespr0300_207
17	NCGC_SNTD_SSR_genotype_2015	tmb1295	genetic_marker	215\|220	tmb1295_215; tmb1295_220
18	NCGC_SNTD_SSR_genotype_2015	tmb0799	genetic_marker	150\|178	tmb0799_150; tmb0799_178
19	NCGC_SNTD_SSR_genotype_2015	jespr0153	genetic_marker	101\|126	jespr0153_101; jespr0153_126
20	NCGC_SNTD_SSR_genotype_2015	gh048	genetic_marker	x\|x	gh048_x; gh048_x
21	NCGC_SNTD_SSR_genotype_2015	bnl1551	genetic_marker	184\|184	bnl1551_184; bnl1551_184
22	NCGC_SNTD_SSR_genotype_2015	bnl2572	genetic_marker	251\|251	bnl2572_251; bnl2572_251
23	NCGC_SNTD_SSR_genotype_2015	cir0286	genetic_marker	124\|130	cir0286_124; cir0286_130
24	NCGC_SNTD_SSR_genotype_2015	jespr0274	genetic_marker	99\|119	jespr0274_99; jespr0274_119
25	NCGC_SNTD_SSR_genotype_2015	dpl0168	genetic_marker	213\|236	dpl0168_213; dpl0168_236

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Snp Genotype Data

Total 63,056 records

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#	Dataset	Marker Name	Allele	Genotype
1	TAMU_SNP63K_genotype	USDA_SNP0016	C/T	T
2	TAMU_SNP63K_genotype	USDA_SNP0020	A/C	C
3	TAMU_SNP63K_genotype	USDA_SNP0022	T/C	T
4	TAMU_SNP63K_genotype	USDA_SNP0026	G/T	G
5	TAMU_SNP63K_genotype	USDA_SNP0027	A/G	A
6	TAMU_SNP63K_genotype	USDA_SNP0039	C/T	T
7	TAMU_SNP63K_genotype	USDA_SNP0049	A/C	M
8	TAMU_SNP63K_genotype	USDA_SNP0057	C/T	C
9	TAMU_SNP63K_genotype	USDA_SNP0064	A/G	-
10	TAMU_SNP63K_genotype	USDA_SNP0070	C/T	C
11	TAMU_SNP63K_genotype	USDA_SNP0073	A/G	G
12	TAMU_SNP63K_genotype	USDA_SNP0074	A/G	A
13	TAMU_SNP63K_genotype	USDA_SNP0075	A/G	G
14	TAMU_SNP63K_genotype	USDA_SNP0076	A/C	M
15	TAMU_SNP63K_genotype	USDA_SNP0077	A/G	G
16	TAMU_SNP63K_genotype	USDA_SNP0084	A/C	-
17	TAMU_SNP63K_genotype	USDA_SNP0085	C/T	-
18	TAMU_SNP63K_genotype	USDA_SNP0092	C/T	T
19	TAMU_SNP63K_genotype	USDA_SNP0102	C/T	C
20	TAMU_SNP63K_genotype	USDA_SNP0107	A/C	A
21	TAMU_SNP63K_genotype	USDA_SNP0109	A/C	C
22	TAMU_SNP63K_genotype	USDA_SNP0111	G/T	T
23	TAMU_SNP63K_genotype	USDA_SNP0121	A/G	A
24	TAMU_SNP63K_genotype	USDA_SNP0134	A/C	C
25	TAMU_SNP63K_genotype	USDA_SNP0136	G/T	T

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Cross References

External references for this accession


Database	Accession
GRIN	PI 694603

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