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Marker Overview
Name | NAU1167 |
Alias | NAU1167=NAU3995 NAU3995
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Genbank ID | BG445815 |
Type | SSR |
Species | Gossypium arboreum |
Germplasm | AKA 8400 AKA 8400
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Source Type | EST |
Repeat Motif | (GATAGG)4 |
PCR Condition | Annealing temperature: 57 |
Primer 1 | NAU1167_F: CTGACTTGGACCGAGAACTT |
Primer 2 | NAU1167_R: AAGAGCCCTGGACAATGATA |
Product Length | 207 |
Restriction Enzyme | EcoRI; XhoI |
Contact | Zhang, Tian-Zhen
|
Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Feature Name | Type | Location | Analysis | Reference |
A03 | chromosome | A03:3444998..3445204 + | Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1 | n/a |
D03 | chromosome | D03:49012108..49012296 - | Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1 | n/a |
CM018204.1 | chromosome | CM018204.1:3573691..3573891 + | Gossypium barbadense (AD2) '3-79' genome HGS_v1.1 | n/a |
CM018217.1 | chromosome | CM018217.1:49291155..49291343 - | Gossypium barbadense (AD2) '3-79' genome HGS_v1.1 | n/a |
D5_02 | chromosome | D5_02:42854117..42854323 - | Gossypium raimondii (D5) 'D5-4' genome NSF_v1 | n/a |
KI_2_4 | chromosome | KI_2_4:38411183..38411383 - | Gossypioides kirkii genome ISU_v3 | n/a |
Chr01_CRI-A2_v1.0.a1 | chromosome | Chr01_CRI-A2_v1.0.a1:110170014..110170220 + | Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1 | n/a |
D10_02 | chromosome | D10_02:47231208..47231414 - | Gossypium turneri (D10) genome NSF_v1_a2 | n/a |
CM016615.1 | chromosome | CM016615.1:107946970..107947158 - | Gossypium australe (G2) genome CRI_v1.1 | n/a |
At_chr5 | chromosome | At_chr5:2164279..2164485 + | Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1 | n/a |
scaffold154.1 | supercontig | scaffold154.1:1567188..1567376 - | Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1 | n/a |
A03 | chromosome | A03:2643780..2643986 + | Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1 | n/a |
D03 | chromosome | D03:42842863..42843051 - | Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1 | n/a |
Ghir_A03 | chromosome | Ghir_A03:4391385..4391585 + | Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1 | n/a |
Ghir_D03 | chromosome | Ghir_D03:48818033..48818221 - | Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1 | n/a |
A03 | chromosome | A03:3941065..3941271 + | Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1 | n/a |
D03 | chromosome | D03:50128947..50129135 - | Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1 | n/a |
A03 | chromosome | A03:4212030..4212236 + | Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1 | n/a |
D03 | chromosome | D03:49797244..49797432 - | Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1 | n/a |
A03 | chromosome | A03:3633226..3633426 + | Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1 | n/a |
D03 | chromosome | D03:49074472..49074666 - | Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1 | n/a |
scaffold16974 | supercontig | scaffold16974:12993..13181 + | Gossypium barbadense (AD2) '3-79' genome HAU_v1 | n/a |
scaffold23090 | supercontig | scaffold23090:47124..47324 - | Gossypium barbadense (AD2) '3-79' genome HAU_v1 | n/a |
Gbar_A03 | chromosome | Gbar_A03:3601896..3602096 + | Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1 | n/a |
Gbar_D03 | chromosome | Gbar_D03:47687508..47687696 - | Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1 | n/a |
A03 | chromosome | A03:3677512..3677712 + | Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1 | n/a |
D03 | chromosome | D03:50079460..50079648 - | Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1 | n/a |
CM017612.1 | chromosome | CM017612.1:3903898..3904098 + | Gossypium tomentosum (AD3) genome HGS_v1.1 | n/a |
CM017625.1 | chromosome | CM017625.1:48504996..48505190 - | Gossypium tomentosum (AD3) genome HGS_v1.1 | n/a |
CM017638.1 | chromosome | CM017638.1:4275629..4275835 + | Gossypium mustelinum (AD4) genome JGI_v1.1 | n/a |
CM017651.1 | chromosome | CM017651.1:52687188..52687382 - | Gossypium mustelinum (AD4) genome JGI_v1.1 | n/a |
CM017690.1 | chromosome | CM017690.1:3865176..3865376 + | Gossypium darwinii (AD5) genome HGS_v1.1 | n/a |
CM017703.1 | chromosome | CM017703.1:50158559..50158753 - | Gossypium darwinii (AD5) genome HGS_v1.1 | n/a |
A03 | chromosome | A03:4283917..4284123 + | Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1 | n/a |
D03 | chromosome | D03:51070682..51070870 - | Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1 | n/a |
Chr02 | chromosome | Chr02:3376536..3376742 + | Gossypium herbaceum (A1) 'Mutema' genome WHU_v1 | n/a |
Chr01 | chromosome | Chr01:114829040..114829246 - | Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1 | n/a |
Chr02 | chromosome | Chr02:44944717..44944923 - | Gossypium raimondii (D5) 'Grai D502' genome HAU_v1 | n/a |
B_04 | chromosome | B_04:4068997..4069191 + | Gossypium anomalum (B1) genome NSF_v1 | n/a |
Chr03 | chromosome | Chr03:46617558..46617764 - | Gossypium thurberi (D1-5) genome CRI_v1 | n/a |
chr03 | chromosome | chr03:31641380..31641586 - | Gossypium armourianum (D2-1) genome ISU_v1 | n/a |
Chr_03 | chromosome | Chr_03:27150152..27150358 - | Gossypium harknessii (D2-2) genome ISU_v1 | n/a |
Chr03 | chromosome | Chr03:48503940..48504158 - | Gossypium davidsonii (D3d-8) genome CRI_v1 | n/a |
Chr03 | chromosome | Chr03:27400746..27401099 - | Gossypium aridum (D4) genome ISU_v1 | n/a |
Chr03 | chromosome | Chr03:23380834..23381028 - | Gossypium gossypioides (D6) genome ISU_v1 | n/a |
Chr03 | chromosome | Chr03:29219732..29219938 - | Gossypium lobatum (D7) genome ISU_v1 | n/a |
E02 | chromosome | E02:83392787..83392981 - | Gossypium stocksii (E1) genome NSF_v1 | n/a |
F02 | chromosome | F02:72802391..72802585 - | Gossypium longicalyx (F1) genome NSF_v1 | n/a |
Chr02 | chromosome | Chr02:4934075..4934281 + | Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1 | n/a |
D03 | chromosome | D03:42842862..42843051 . | Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1 | Wang F, Zhang J, Chen Y, Zhang C, Gong J, Song Z, Zhou J, Wang J, Zhao C, Jiao M, Liu A, Du Z, Yuan Y, Fan S, Zhang J. Identification of candidate genes for key fibre‐related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions. Plant biotechnology journal. 2020; 18(3):707-720. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch17_Dt.03 | N/A | 25 | NAU1167 | View |
2 | AD-genome wide Reference Map (2009) | AD_ch17_Dt.03 | N/A | 29 | NAU1167 | View |
3 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 11 | NAU1167 | View |
4 | TM-1 x 3-79, RIL (2012) | AD_ch03_At.03 | N/A | 97.46 | NAU1167 | View |
5 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_chU | N/A | 0 | NAU1167 | View |
6 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch17_Dt.03 | N/A | 39.1 | NAU1167 | View |
7 | Prema x 86-1, RIL (2015) | AD_ch03_At.03 | N/A | 54.7 | NAU1167 | View |
8 | Baimian 1 x TM-1 , F2:3 (2014) | AD_ch03_At.03 | N/A | 57 | NAU1167 | View |
9 | Yumian-1 x 7235, RIL (2015) | AD_ch17_Dt.03 | N/A | 84.9 | NAU1167 | View |
10 | DH962 X Ji Mian 5, F2 (2015) | AD_chU | N/A | 4.18 | NAU1167 | View |
11 | TM-1 x 3-79, RIL (2014) | AD_ch03_At.03 | N/A | 18.9 | NAU1167 | View |
12 | W10 x TM-1, F2:3 (2015) | AD_ch02_At.02 | N/A | 200.1 | NAU1167 | View |
13 | (86-1 x G. anomalum) x Su8289, BC2F1 (2015) | ABD_Bh.03 | N/A | 35.2 | NAU1167 | View |
14 | DH962 x Ji Mian 5, RIL (2015) | AD_chU | N/A | 0 | NAU1167 | View |
15 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch17_Dt.03 | N/A | 30.2 | NAU1167 | View |
16 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch17_Dt.03 | N/A | 67.9 | NAU1167 | View |
17 | LMY28 x XLZ24, RIL (2018) | AD_ch03_At.03 | N/A | 85.26 | NAU1167 | View |
18 | LMY22 x LY343, RIL (2016) | chr.17 | N/A | 0 | NAU1167 | View |
19 | LMY22 x LY343, RIL (2020) | D03 | N/A | 70.83 | NAU1167 | View |
20 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A02 | N/A | 8.8 | NAU1167-a | View |
21 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A03 | N/A | 167.2 | NAU1167-b | View |
22 | TM-1 x Hai-7124, BC1 (2008) | AD_ch03_At.03 | N/A | 105.33 | NAU1167-200 | View |
23 | TM-1 x Hai-7124, BC1 (2007) | AD_ch03_At.03 | N/A | 107.5 | NAU1167-200 | View |
24 | TM-1 x Hai-7124, BC1 (2012) | AD_ch03_At.03 | N/A | 102.6 | NAU1167-200 | View |
25 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch03_At.03 | N/A | 86.8 | NAU1167a | View |
26 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch17_Dt.03 | N/A | 91.2 | NAU1167b | View |
27 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch17_Dt.03 | N/A | 82 | NAU1167 | View |
28 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch17_Dt.03 | N/A | 87.47 | NAU1167 | View |
29 | TM-1 x 3-79, RIL (2012.v3) | AD_ch03_At.03 | N/A | 18.91 | NAU1167 | View |
Sequence
>NAU1167 ID=NAU1167; Name=NAU1167; organism=Gossypium arboreum; type=genetic_marker; length=207bp CTGACTTGGACCGAGAACTTGAATCCATCATTAGGAATAGAAGAAGGAAC TCTGCATCGATCGTGCAGCTGCTTCAAGGTGTTAGAGAGAGAATGGTATC TGAAGGCGAGAATTCTGAGAATGATAGGGATAGGGATAGGGATAGGGACA GGGACGGAGTAATTNTCATCAATCCTTTCAATCAGACTATCATTGTCCAG GGCTCTT
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