NAU1167, NAU1167 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1167
AliasNAU1167=NAU3995
NAU3995
Genbank IDBG445815
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(GATAGG)4
PCR ConditionAnnealing temperature: 57
Primer 1NAU1167_F: CTGACTTGGACCGAGAACTT
Primer 2NAU1167_R: AAGAGCCCTGGACAATGATA
Product Length207
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG445815
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:3444998..3445204 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:49012108..49012296 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:3573691..3573891 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:49291155..49291343 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:42854117..42854323 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:38411183..38411383 -Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:110170014..110170220 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:47231208..47231414 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:107946970..107947158 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:2164279..2164485 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold154.1supercontigscaffold154.1:1567188..1567376 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:2643780..2643986 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:42842863..42843051 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:4391385..4391585 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:48818033..48818221 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:3941065..3941271 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:50128947..50129135 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:4212030..4212236 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:49797244..49797432 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:3633226..3633426 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:49074472..49074666 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold16974supercontigscaffold16974:12993..13181 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23090supercontigscaffold23090:47124..47324 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:3601896..3602096 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:47687508..47687696 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:3677512..3677712 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:50079460..50079648 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:3903898..3904098 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:48504996..48505190 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:4275629..4275835 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:52687188..52687382 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:3865176..3865376 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:50158559..50158753 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:4283917..4284123 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:51070682..51070870 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:3376536..3376742 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:114829040..114829246 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:44944717..44944923 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:4068997..4069191 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:46617558..46617764 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:31641380..31641586 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:27150152..27150358 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:48503940..48504158 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:27400746..27401099 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:23380834..23381028 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:29219732..29219938 -Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:83392787..83392981 -Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:72802391..72802585 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:4934075..4934281 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
D03chromosomeD03:42842862..42843051 .Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Wang F, Zhang J, Chen Y, Zhang C, Gong J, Song Z, Zhou J, Wang J, Zhao C, Jiao M, Liu A, Du Z, Yuan Y, Fan S, Zhang J. Identification of candidate genes for key fibre‐related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions. Plant biotechnology journal. 2020; 18(3):707-720.
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A25NAU1167View
2AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A29NAU1167View
3AD-genome wide Reference Map (2009)AD_ch03_At.03N/A11NAU1167View
4TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A97.46NAU1167View
5Zhongmiansuo-12 x 8891, RIL (2007)AD_chUN/A0NAU1167View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch17_Dt.03N/A39.1NAU1167View
7Prema x 86-1, RIL (2015)AD_ch03_At.03N/A54.7NAU1167View
8Baimian 1 x TM-1 , F2:3 (2014)AD_ch03_At.03N/A57NAU1167View
9Yumian-1 x 7235, RIL (2015)AD_ch17_Dt.03N/A84.9NAU1167View
10DH962 X Ji Mian 5, F2 (2015)AD_chUN/A4.18NAU1167View
11TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A18.9NAU1167View
12W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A200.1NAU1167View
13(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.03N/A35.2NAU1167View
14DH962 x Ji Mian 5, RIL (2015)AD_chUN/A0NAU1167View
15CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch17_Dt.03N/A30.2NAU1167View
16CCRI-35 x Yumian-1, RIL (2015)AD_ch17_Dt.03N/A67.9NAU1167View
17LMY28 x XLZ24, RIL (2018)AD_ch03_At.03N/A85.26NAU1167View
18LMY22 x LY343, RIL (2016)chr.17N/A0NAU1167View
19LMY22 x LY343, RIL (2020)D03N/A70.83NAU1167View
20JLZM x ZJXSLS, F2 (2008)A_JZ_A02N/A8.8NAU1167-aView
21JLZM x ZJXSLS, F2 (2008)A_JZ_A03N/A167.2NAU1167-bView
22TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A105.33NAU1167-200View
23TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A107.5NAU1167-200View
24TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A102.6NAU1167-200View
25TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch03_At.03N/A86.8NAU1167aView
26TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch17_Dt.03N/A91.2NAU1167bView
27CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch17_Dt.03N/A82NAU1167View
28CCRI-35 x Yumian-1, RIL (2017)AD_ch17_Dt.03N/A87.47NAU1167View
29TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A18.91NAU1167View
Sequence
>NAU1167 ID=NAU1167; Name=NAU1167; organism=Gossypium arboreum; type=genetic_marker; length=207bp
CTGACTTGGACCGAGAACTTGAATCCATCATTAGGAATAGAAGAAGGAAC
TCTGCATCGATCGTGCAGCTGCTTCAAGGTGTTAGAGAGAGAATGGTATC
TGAAGGCGAGAATTCTGAGAATGATAGGGATAGGGATAGGGATAGGGACA
GGGACGGAGTAATTNTCATCAATCCTTTCAATCAGACTATCATTGTCCAG
GGCTCTT