rna-gnl|WGS:VKDL|Gobar.A13G086000.1, rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1 (mRNA) Gossypium barbadense
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Transcript Overview
Cross References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|39841 (AT5G15790.5 | RING/U-box superfamily protein | Chr5:5149800-5150964 FORWARD LENGTH=232 | 201606) HSP 1 Score: 98.9821 bits (245), Expect = 2.138e-25 Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0
Query: 132 YGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
Y + +DEDVCPTCLE+YI ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 173 YITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHET 231
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|39839 (AT5G15790.3 | RING/U-box superfamily protein | Chr5:5149800-5150964 FORWARD LENGTH=232 | 201606) HSP 1 Score: 98.9821 bits (245), Expect = 2.138e-25 Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0
Query: 132 YGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
Y + +DEDVCPTCLE+YI ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 173 YITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHET 231
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|39838 (AT5G15790.2 | RING/U-box superfamily protein | Chr5:5149800-5150964 FORWARD LENGTH=232 | 201606) HSP 1 Score: 98.9821 bits (245), Expect = 2.138e-25 Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0
Query: 132 YGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
Y + +DEDVCPTCLE+YI ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 173 YITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHET 231
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|39837 (AT5G15790.1 | RING/U-box superfamily protein | Chr5:5149800-5150964 FORWARD LENGTH=232 | 201606) HSP 1 Score: 98.9821 bits (245), Expect = 2.138e-25 Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0
Query: 132 YGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
Y + +DEDVCPTCLE+YI ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 173 YITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFHET 231
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|42741 (AT5G38895.1 | RING/U-box superfamily protein | Chr5:15572084-15573315 FORWARD LENGTH=221 | 201606) HSP 1 Score: 97.4413 bits (241), Expect = 7.886e-25 Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 0
Query: 105 GNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVE 191
G+K + S S P EV Y +DED+CPTCL+DY ENP+I+ +CSH +HL CIYEWMERSE CP+C K+M F E E
Sbjct: 135 GSKEVYTKGSSTFTKSKTMPGIEVY--YADSDDEDICPTCLDDYTLENPKIITKCSHHFHLSCIYEWMERSETCPVCGKVMAFDENE 219
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|20532 (AT3G02290.6 | RING/U-box superfamily protein | Chr3:459385-460688 FORWARD LENGTH=231 | 201606) HSP 1 Score: 97.0561 bits (240), Expect = 1.342e-24 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query: 136 EDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
EDEDVCPTCLE+Y ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 176 EDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|20530 (AT3G02290.4 | RING/U-box superfamily protein | Chr3:459385-460688 FORWARD LENGTH=231 | 201606) HSP 1 Score: 97.0561 bits (240), Expect = 1.342e-24 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query: 136 EDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
EDEDVCPTCLE+Y ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 176 EDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|20529 (AT3G02290.3 | RING/U-box superfamily protein | Chr3:459385-460688 FORWARD LENGTH=231 | 201606) HSP 1 Score: 97.0561 bits (240), Expect = 1.342e-24 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query: 136 EDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
EDEDVCPTCLE+Y ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 176 EDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|20528 (AT3G02290.2 | RING/U-box superfamily protein | Chr3:459385-460688 FORWARD LENGTH=231 | 201606) HSP 1 Score: 97.0561 bits (240), Expect = 1.342e-24 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query: 136 EDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
EDEDVCPTCLE+Y ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 176 EDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Match: gnl|BL_ORD_ID|20527 (AT3G02290.1 | RING/U-box superfamily protein | Chr3:459385-460688 FORWARD LENGTH=231 | 201606) HSP 1 Score: 97.0561 bits (240), Expect = 1.342e-24 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query: 136 EDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
EDEDVCPTCLE+Y ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 176 EDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.292e-23 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0
Query: 136 EDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
EDEDVCPTCLE+Y ENP+IV +CSH +HL CIYEWMERSENCP+C K+M F E
Sbjct: 176 EDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy Swiss-Prot
Match: RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.423e-15 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0
Query: 136 EDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMF 187
E+ED CP C EDY ENPR+ +C H +HL C+ EW+ERS+ CPIC K ++F
Sbjct: 134 EEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVF 185
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy Swiss-Prot
Match: AIRP1_ARATH (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.989e-13 Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0
Query: 139 DVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGE 189
D CP CLE+Y +NP+++ +C H +HL CI WMERSE CP+C K ++ E
Sbjct: 102 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDKELVLTE 152
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy Swiss-Prot
Match: RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 8.686e-10 Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 0
Query: 138 EDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMF 187
+D C CLE + ++P V C H YHL CI EW +RS+ CPIC ++ +
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVL 92
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy Swiss-Prot
Match: RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 4.098e-8 Identity = 22/57 (38.60%), Postives = 32/57 (56.14%), Query Frame = 0
Query: 133 GSLED--EDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMF 187
G ++D +D C CLE + +P + C H YHL CI EW +RS CP+C + +
Sbjct: 23 GGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISL 79
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|1029021077|ref|XP_016674383.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Gossypium hirsutum] >gi|1347712337|gb|PPS09386.1| hypothetical protein GOBAR_AA11260 [Gossypium barbadense]) HSP 1 Score: 438.343 bits (1126), Expect = 8.762e-156 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ 209
MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ
Sbjct: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ 209
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|1050595160|ref|XP_017619043.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Gossypium arboreum]) HSP 1 Score: 433.721 bits (1114), Expect = 6.191e-154 Identity = 206/209 (98.56%), Postives = 207/209 (99.04%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ 209
MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPA NSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYR+NHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGE EIGSPLTKDERMIFEGTFQ
Sbjct: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPASNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRLNHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEAEIGSPLTKDERMIFEGTFQ 209
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|1344106269|gb|PPD80200.1| (hypothetical protein GOBAR_DD22869 [Gossypium barbadense]) HSP 1 Score: 412.149 bits (1058), Expect = 3.144e-145 Identity = 198/212 (93.40%), Postives = 201/212 (94.81%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGS---PLTKDERMIFEGTFQ 209
MGACCCCLGIRDPE HVS FISLNSVIHALR KFTGVRSNEQSDSPA NSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYR+NHTEHASIGNKSAGVQCESQLKFSHDK ETEVGC YGSLEDE+VCPTCLEDYIPENPRIVLQCSHTYHLGCIY+WMERSENCPIC KMMMFGE EIGS PLTKDERMIFEGTFQ
Sbjct: 1 MGACCCCLGIRDPEQHVSPFISLNSVIHALRSKFTGVRSNEQSDSPASNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRLNHTEHASIGNKSAGVQCESQLKFSHDKSETEVGCGYGSLEDENVCPTCLEDYIPENPRIVLQCSHTYHLGCIYKWMERSENCPICGKMMMFGEAEIGSQETPLTKDERMIFEGTFQ 212
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|823266294|ref|XP_012465849.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Gossypium raimondii]) HSP 1 Score: 406.371 bits (1043), Expect = 5.769e-143 Identity = 196/208 (94.23%), Postives = 198/208 (95.19%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGS---PLTKDERMIFE 205
MGACCCCLGIRDPE HVS FISLNSVIHALR KFTGVRSNEQSDSPA NSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYR+NHTEHASIGNKSAGVQCESQLKFSHDKPETEVGC YGSLEDE+VCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPIC KMMMFGE EIGS PLTKDERMIFE
Sbjct: 1 MGACCCCLGIRDPEQHVSPFISLNSVIHALRSKFTGVRSNEQSDSPASNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRLNHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCGYGSLEDENVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICGKMMMFGEAEIGSQETPLTKDERMIFE 208
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|763813564|gb|KJB80416.1| (hypothetical protein B456_013G096200 [Gossypium raimondii]) HSP 1 Score: 370.933 bits (951), Expect = 2.850e-129 Identity = 177/190 (93.16%), Postives = 182/190 (95.79%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
MGACCCCLGIRDPE HVS FISLNSVIHALR KFTGVRSNEQSDSPA NSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYR+NHTEHASIGNKSAGVQCESQLKFSHDKPETEVGC YGSLEDE+VCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPIC K++ F +V
Sbjct: 1 MGACCCCLGIRDPEQHVSPFISLNSVIHALRSKFTGVRSNEQSDSPASNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRLNHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCGYGSLEDENVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICGKVICFYKV 190
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|1269927334|ref|XP_022775754.1| (E3 ubiquitin-protein ligase At3g02290-like [Durio zibethinus]) HSP 1 Score: 169.859 bits (429), Expect = 9.334e-50 Identity = 100/195 (51.28%), Postives = 130/195 (66.67%), Query Frame = 0
Query: 22 SLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFN----NIITHTARVLHSEADTTPSYEYD--RIEGREDYRINHTEHASIGNKSAGVQCE-----SQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFE 205
SL S + ++TG++SNEQ D+PA +QV+APL+S A N NI+T R+LH +AD T S ++ +I+ +E+ +++ EH G KS G+QCE S+ KFS +KPETEV G EDEDVCPTCLE+YIPENPRIVLQCSH+YHL CIYEWMERSENCPIC K++ F P + + FE
Sbjct: 14 SLASWAYKFVQQYTGIKSNEQLDAPASAAQVAAPLNSYAVSNDIQSNIVTSAPRILHFDADVTLSDQHQDGQIKEQENDQVD-MEHDCNGIKSTGLQCEARCLESKTKFSSEKPETEVARACGLSEDEDVCPTCLEEYIPENPRIVLQCSHSYHLSCIYEWMERSENCPICGKVIQFLYSSALIPFSLRFKSYFE 207
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|508709730|gb|EOY01627.1| (RING/U-box superfamily protein [Theobroma cacao]) HSP 1 Score: 169.474 bits (428), Expect = 1.716e-49 Identity = 101/208 (48.56%), Postives = 127/208 (61.06%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTF---ISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTA----RVLHSEADTT-PSYEYD-RIEGREDYRINHTEHASIGNKSAGVQCES---------QLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
M CCC+ IRD E + T SL +I L K T + N QSD+P +QV++PL + A ++I TA R LH AD T PS + D ++ ++ ++ EHAS GN+SA +QCE QLKFS +K E EV ED DVCPTCLE+YIP+NPRIVL+CSH+YHLGCIYEWMERSENCPIC +M F E
Sbjct: 1 MAIICCCIHIRDHEDEIPTSHIRSSLKRIIRTLVRKHTELFGNGQSDAPVSTAQVASPLSFDVASDDIQLDTATTPPRPLHFAADATRPSQQQDGQVREHKNNQVIDLEHASKGNESAELQCEGISTACCSEPQLKFSSEKSEAEVARACEESED-DVCPTCLEEYIPDNPRIVLRCSHSYHLGCIYEWMERSENCPICGMVMEFHEA 207
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|1063466740|ref|XP_017969959.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Theobroma cacao]) HSP 1 Score: 167.548 bits (423), Expect = 7.521e-49 Identity = 100/208 (48.08%), Postives = 127/208 (61.06%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTF---ISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTA----RVLHSEADTT-PSYEYD-RIEGREDYRINHTEHASIGNKSAGVQCES---------QLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
M CCC+ IRD E + T SL +I L K T + N QSD+P +QV++PL + A ++I TA R LH AD T PS + D ++ ++ ++ EHAS GN+SA ++CE QLKFS +K E EV ED DVCPTCLE+YIP+NPRIVL+CSH+YHLGCIYEWMERSENCPIC +M F E
Sbjct: 1 MAIICCCIHIRDHEDEIPTSHIRSSLKRIIRTLVRKHTELFGNGQSDAPVSTAQVASPLSFDVASDDIQLDTATTPPRPLHFAADATRPSQQQDGQVREHKNNQVIDLEHASKGNESAELKCEGISTACCSEPQLKFSSEKSEAEVARACEESED-DVCPTCLEEYIPDNPRIVLRCSHSYHLGCIYEWMERSENCPICGMVMEFHEA 207
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|1269970404|ref|XP_022735658.1| (E3 ubiquitin-protein ligase At3g02290-like [Durio zibethinus]) HSP 1 Score: 168.703 bits (426), Expect = 1.110e-48 Identity = 108/252 (42.86%), Postives = 131/252 (51.98%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISL---NSVIHALRGKF------------------------------------------TGVRSNEQSDSPALNSQVSAPLDSNAAFNNI-----ITHTARVLHSE-ADTTPSYEYDRIEGREDYRINHTEHASI-----GNKSAGVQCE------SQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
MG C C IR+PE VST + N +IH L KF TG+ S EQSD+P +QV+APL S+ A NNI +T R+LH + AD T S + ++D +I E+ + NKS G+Q E SQLKFS +K E EV C EDEDVCP CLE+YIPENP+IVLQCSH YHL CIYEWMERSE+CPIC KMM+F E
Sbjct: 1 MGNICSCFHIREPEEDVSTCQNCTCPNCIIHTLLDKFFLLRLEESCHSYSDSMFLSYWLLFQAIIGGIIRNLYKFVQQYTGIFSKEQSDAPTSTAQVAAPLSSDVASNNIQSNHIVTSAPRILHFDIADATSSSQ------KQDGQIREQENGQVDMEHDSNKSTGLQFEGTSIAQSQLKFSSEKSEAEVACACELSEDEDVCPICLEEYIPENPKIVLQCSHGYHLSCIYEWMERSESCPICDKMMIFDEA 246
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Match: gi|1204920261|ref|XP_021293000.1| (E3 ubiquitin-protein ligase At3g02290 [Herrania umbratica]) HSP 1 Score: 164.081 bits (414), Expect = 1.989e-47 Identity = 96/210 (45.71%), Postives = 126/210 (60.00%), Query Frame = 0
Query: 1 MGACCCCLGIRD-----PELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTA----RVLHSEADTT-PSYEYD-RIEGREDYRINHTEHASIGNKSAGVQCES---------QLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
M CCC+ IRD P H+ + SL +I L K + N QSD+P +QV++PL + A ++I TA R LH + D T PS + D ++ + ++ EHAS GN+SA +QCE +LKFS +K E C+ ++DVCPTCLE+YIPENPRIVL+CSH+YHLGCIYEWMERSENCPIC +M F E
Sbjct: 1 MANFCCCIHIRDLEEEIPNSHIRS--SLKRIIRTLVRKHAELFGNGQSDAPVSTAQVASPLSFDVASDDIQPDTAITPPRHLHFDTDATRPSQQQDGQVREHNNNQVIDLEHASKGNESAELQCEGISTTSCSEPELKFSSEKSEVARACEES---EDDVCPTCLEEYIPENPRIVLRCSHSYHLGCIYEWMERSENCPICGMVMEFHEA 205
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A2P5Y1G7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11260 PE=4 SV=1) HSP 1 Score: 438.343 bits (1126), Expect = 7.360e-156 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ 209
MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ
Sbjct: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ 209
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A1U8IDJ8_GOSHI (E3 ubiquitin-protein ligase SDIR1-like OS=Gossypium hirsutum OX=3635 GN=LOC107893802 PE=4 SV=1) HSP 1 Score: 438.343 bits (1126), Expect = 7.360e-156 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ 209
MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ
Sbjct: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGSPLTKDERMIFEGTFQ 209
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A2P5R085_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD22869 PE=4 SV=1) HSP 1 Score: 412.149 bits (1058), Expect = 2.641e-145 Identity = 198/212 (93.40%), Postives = 201/212 (94.81%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEVEIGS---PLTKDERMIFEGTFQ 209
MGACCCCLGIRDPE HVS FISLNSVIHALR KFTGVRSNEQSDSPA NSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYR+NHTEHASIGNKSAGVQCESQLKFSHDK ETEVGC YGSLEDE+VCPTCLEDYIPENPRIVLQCSHTYHLGCIY+WMERSENCPIC KMMMFGE EIGS PLTKDERMIFEGTFQ
Sbjct: 1 MGACCCCLGIRDPEQHVSPFISLNSVIHALRSKFTGVRSNEQSDSPASNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRLNHTEHASIGNKSAGVQCESQLKFSHDKSETEVGCGYGSLEDENVCPTCLEDYIPENPRIVLQCSHTYHLGCIYKWMERSENCPICGKMMMFGEAEIGSQETPLTKDERMIFEGTFQ 212
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A0D2VBM1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G096200 PE=4 SV=1) HSP 1 Score: 370.933 bits (951), Expect = 2.394e-129 Identity = 177/190 (93.16%), Postives = 182/190 (95.79%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRINHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
MGACCCCLGIRDPE HVS FISLNSVIHALR KFTGVRSNEQSDSPA NSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYR+NHTEHASIGNKSAGVQCESQLKFSHDKPETEVGC YGSLEDE+VCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPIC K++ F +V
Sbjct: 1 MGACCCCLGIRDPEQHVSPFISLNSVIHALRSKFTGVRSNEQSDSPASNSQVSAPLDSNAAFNNIITHTARVLHSEADTTPSYEYDRIEGREDYRLNHTEHASIGNKSAGVQCESQLKFSHDKPETEVGCGYGSLEDENVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICGKVICFYKV 190
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A061EB51_THECC (RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_011474 PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.441e-49 Identity = 101/208 (48.56%), Postives = 127/208 (61.06%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTF---ISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHTA----RVLHSEADTT-PSYEYD-RIEGREDYRINHTEHASIGNKSAGVQCES---------QLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
M CCC+ IRD E + T SL +I L K T + N QSD+P +QV++PL + A ++I TA R LH AD T PS + D ++ ++ ++ EHAS GN+SA +QCE QLKFS +K E EV ED DVCPTCLE+YIP+NPRIVL+CSH+YHLGCIYEWMERSENCPIC +M F E
Sbjct: 1 MAIICCCIHIRDHEDEIPTSHIRSSLKRIIRTLVRKHTELFGNGQSDAPVSTAQVASPLSFDVASDDIQLDTATTPPRPLHFAADATRPSQQQDGQVREHKNNQVIDLEHASKGNESAELQCEGISTACCSEPQLKFSSEKSEAEVARACEESED-DVCPTCLEEYIPDNPRIVLRCSHSYHLGCIYEWMERSENCPICGMVMEFHEA 207
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: M5WZ55_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G248900 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.910e-32 Identity = 86/228 (37.72%), Postives = 116/228 (50.88%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVS-------TFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHT----ARVLHSEADTTPSY---EYDRIEGREDYRINHT---------------EHASIGNKSAGVQCE---------SQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
MG+ CCCL D E +V+ I L+ I +T + + S + Q +A + S+A+ +N I+ R L +AD P Y + D + R + +H+ E S G K G CE S +KFS K T VG Y S EDEDVCPTCLE+Y PENP+I+ +CSH +HLGCIYEWMERSE+CP+C K+M+F E
Sbjct: 1 MGSVCCCLNAEDFEDYVNPNSSAYRNCICLSCFIENFLNVYTSLFRRGEVHSIPSSIQGAASMTSSASLDNSISDMYRSPPRPLPYDAD--PRYIRLQRDGLISRREKGSSHSHEEAEPLRSDTDADSECLSTGEKWNGSACEDGVKEHRSKSSMKFSSAKATTIVGNFYISSEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGKVMVFDET 226
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A291ID76_PRUAR (E3 ubiquitin-protein ligase OS=Prunus armeniaca OX=36596 GN=ParM-6 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.776e-32 Identity = 86/228 (37.72%), Postives = 116/228 (50.88%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVS-------TFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHT----ARVLHSEADTTPSY---EYDRIEGREDYRINHT---------------EHASIGNKSAGVQCE---------SQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
MG+ CCCL D E +V+ I L+ I +T + + S + Q +A + S+A+ +N I+ R L +AD P Y + D + R + +H+ E S G K G CE S +KFS K T VG Y S EDEDVCPTCLE+Y PENP+I+ +CSH +HLGCIYEWMERSE+CP+C K+M+F E
Sbjct: 1 MGSVCCCLNAEDFEDYVNPNSSAYRNCICLSCFIENFLNVYTSLFRRGEVHSIPSSIQGAASMMSSASLDNSISDMYRSPPRPLPYDAD--PRYIRLQRDGLISRREKGSSHSHEEAEPLRSDTDADSECLSTGEKWNGSACEDGVKEHRSKSSMKFSSAKATTVVGNFYISSEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGKVMVFDET 226
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A314UPR2_PRUYE (E3 ubiquitin-protein ligase OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_14413 PE=4 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.687e-31 Identity = 85/228 (37.28%), Postives = 113/228 (49.56%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVS-------TFISLNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHT----ARVLHSEADTTPSYEYDRIEGREDYRINHTEHA------------------SIGNKSAGVQCE---------SQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
MG+ CCCL D E +V+ I L+ I +T + + S + Q +A + S+A+ +N I+ R L +AD P Y + +G R + H+ S G K G CE S KFS K T VG Y S EDEDVCPTCLE+Y PENP+I+ +CSH +HLGCIYEWMERSE+CP+C K+M+F E
Sbjct: 1 MGSVCCCLNAEDFEDYVNPNSSAYRNCICLSCFIENFLNVYTSLFRRGEVHSIPSSIQGAASMTSSASLDNSISDMYRSPPRPLPYDAD--PRYIRLQRDGLISRREKGSSHSHEEAEPLRSDTDADSDCLSTGEKWNGSACEDGVKEHRSKSSTKFSSAKATTVVGNFYISSEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGKVMVFDET 226
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A0A0KSH8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G642120 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.542e-30 Identity = 82/228 (35.96%), Postives = 116/228 (50.88%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFIS-------LNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHT----ARVLHSEADTTPSY---EYDRIEGREDYRINH-------------TEHASIGN--KSAGVQC---------ESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
MGA CCCL + D E +V+ S L+ I + +T + + S + + Q + ++S A+ +N ++ R L +AD P Y + D + R + +H T+ S+G+ K G C +S LKF K + +G Y S EDEDVCPTCLE+Y ENP+IV +CSH +HLGCIYEWMERS+NCP+C K M F E
Sbjct: 1 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDAD--PRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGSGGKRNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDET 226
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Match: A0A1S3CA28_CUCME (E3 ubiquitin-protein ligase At3g02290 OS=Cucumis melo OX=3656 GN=LOC103498549 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.251e-30 Identity = 82/228 (35.96%), Postives = 116/228 (50.88%), Query Frame = 0
Query: 1 MGACCCCLGIRDPELHVSTFIS-------LNSVIHALRGKFTGVRSNEQSDSPALNSQVSAPLDSNAAFNNIITHT----ARVLHSEADTTPSY---EYDRIEGREDYRINH-------------TEHASIGN--KSAGVQC---------ESQLKFSHDKPETEVGCDYGSLEDEDVCPTCLEDYIPENPRIVLQCSHTYHLGCIYEWMERSENCPICAKMMMFGEV 190
MGA CCCL + D E +V+ S L+ I + +T + + S + + Q + ++S A+ +N ++ R L +AD P Y + D + R + +H T+ S+G+ K G C +S LKF K + +G Y S EDEDVCPTCLE+Y ENP+IV +CSH +HLGCIYEWMERS+NCP+C K M F E
Sbjct: 1 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDAD--PRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDET 226 The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. Araport11
Analysis Date: 2019-11-12 (BLASTP of HGS_v1.1 Gossypium barbadense proteins vs arabidopsis Araport11) Total hits: 10
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy Swiss-Prot
Analysis Date: 2019-11-12 (BLASTP of HGS_v1.1 Gossypium barbadense proteins vs UniProt Swissprot) Total hits: 5
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. NCBI nr
Analysis Date: 2019-11-14 (BLASTP of HGS_v1.1 Gossypium barbadense proteins vs NCBI nr) Total hits: 10
BLAST of rna-gnl|WGS:VKDL|Gobar.A13G086000.1 vs. ExPASy TrEMBL
Analysis Date: 2019-11-18 (BLASTP of HGS_v1.1 Gossypium barbadense proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for HGS_v1.1 Gossypium barbadense proteins
Date Performed: 2019-11-12
Sequences
The
following sequences are available for this feature:
protein sequence of rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1 >rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1 ID=rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1; Name=rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1; organism=Gossypium barbadense; type=polypeptide; length=209bpback to top mRNA from alignment at CM018214.1:27923659..27925486+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1 ID=rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1; Name=rna-gnl|WGS:VKDL|Gobar.A13G086000.1; organism=Gossypium barbadense; type=mRNA; length=1828bp; location=Sequence derived from: CM018214.1:27923659..27925486+ (Gossypium barbadenseback to top Coding sequence (CDS) from alignment at CM018214.1:27923659..27925486+ >rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1 ID=rna-gnl|WGS:VKDL|Gobar.A13G086000.1_HGS-AD2_v1.1; Name=rna-gnl|WGS:VKDL|Gobar.A13G086000.1; organism=Gossypium barbadense; type=CDS; length=630bp; location=Sequence derived from: CM018214.1:27923659..27925486+ (Gossypium barbadenseback to top |