Pima S-7 x im, F2 (2007) | Cottongen

Map Overview


Name	Pima S-7 x im, F2 (2007)
Species	Gossypium barbadense x hirsutum
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	im Gh
Paternal parent	Pima S-7
Population size	124
Number of loci	364
Number of QTL	51
Number of linkage groups	39
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Pima S-7 x im, F2

population

Alias:	im-F2
Description:	genetic mapping
Population size:	124
Secondary id:	cdbpop_000053
Pedigree:	im, Gh / Pima S-7

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2007	Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH. Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics. 2007 Aug; 176(4):2577-88

Map Loci

This map contains 364 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Pima S-7 x im, F2 (2007).chr20	Coau2O08	Coau2O08	marker_locus	106.8 cM
Pima S-7 x im, F2 (2007).chr20	Unig26G09	Unig26G09	marker_locus	111.8 cM
Pima S-7 x im, F2 (2007).chr20	P12-13	p12-13	marker_locus	122.8 cM
Pima S-7 x im, F2 (2007).chr20	Gate3BD01	Gate3BD01	marker_locus	131.5 cM
Pima S-7 x im, F2 (2007).chr20	Gate1AH09	Gate1AH09d	marker_locus	137.3 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Unig28F05	Unig28F05	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	A1188	A1188	marker_locus	19.1 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Unig26F09	Unig26F09c	marker_locus	38.5 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Gate4DC07	Gate4DC07b	marker_locus	49.4 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	pAR0883	pAR0883c	marker_locus	64.6 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	pBAM291	pBAM291c	marker_locus	83.4 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	pBAM291	pBAM291d	marker_locus	86.7 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Gate4AC11	Gate4AC11c	marker_locus	90.1 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	pAR0144	pAR0144e	marker_locus	93.5 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Gate1DG09	Gate1DG09c	marker_locus	95.3 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Unig24A10	Unig24A10c	marker_locus	114.9 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Unig24A10	Unig24A10d	marker_locus	115.7 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Gate1DG01	Gate1DG01b	marker_locus	117.8 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	pGH505	PGH505b	marker_locus	126.6 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	pAR0944	pAR0944b	marker_locus	156.3 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Unig06E08	Unig06E08	marker_locus	163.7 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Gate2CA09	Gate2CA09b	marker_locus	169.3 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	Gate2CA09	Gate2CA09c	marker_locus	173 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	pAR0570	pAR0570b	marker_locus	178.5 cM
Pima S-7 x im, F2 (2007).chr21/lgD02	pAR0144	pAR0144f	marker_locus	178.5 cM

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Map QTL

This map contains 51 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Pima S-7 x im, F2 (2007).chr26	qFLBL.im-F2_ch26	QTL	143.9 cM	166.1 cM	-

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