Pima S-7 x im, F2 (2007) | Cottongen

Map Overview


Name	Pima S-7 x im, F2 (2007)
Species	Gossypium barbadense x hirsutum
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	im Gh
Paternal parent	Pima S-7
Population size	124
Number of loci	364
Number of QTL	51
Number of linkage groups	39
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Pima S-7 x im, F2

population

Alias:	im-F2
Description:	genetic mapping
Population size:	124
Secondary id:	cdbpop_000053
Pedigree:	im, Gh / Pima S-7

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2007	Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH. Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics. 2007 Aug; 176(4):2577-88

Map Loci

This map contains 364 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Pima S-7 x im, F2 (2007).chr17.2	Unig24G02	Unig24G02c	marker_locus	45.7 cM
Pima S-7 x im, F2 (2007).chr17.2	pGH639	PGH639b	marker_locus	60.6 cM
Pima S-7 x im, F2 (2007).chr18	Gate4CD04	Gate4CD04a	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr18	Unig26C04	Unig26C04b	marker_locus	4.2 cM
Pima S-7 x im, F2 (2007).chr18	Gate1BA08	Gate1BA08	marker_locus	14.6 cM
Pima S-7 x im, F2 (2007).chr18	Coau1H06	Coau1H06	marker_locus	24.8 cM
Pima S-7 x im, F2 (2007).chr18	G1125	G1125a	marker_locus	26.2 cM
Pima S-7 x im, F2 (2007).chr18	Unig24A07	Unig24A07	marker_locus	27.5 cM
Pima S-7 x im, F2 (2007).chr18	Gate4DG12	Gate4DG12a	marker_locus	27.5 cM
Pima S-7 x im, F2 (2007).chr18	Gate3BG09	Gate3BG09b	marker_locus	39.7 cM
Pima S-7 x im, F2 (2007).chr18	Gate3BG09	Gate3BG09c	marker_locus	47.1 cM
Pima S-7 x im, F2 (2007).chr18	pAR0756	pAR0756	marker_locus	58.1 cM
Pima S-7 x im, F2 (2007).chr18	Unig24C06	Unig24C06	marker_locus	67 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	Gate2BF02	Gate2BF02	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	A1259	A1259	marker_locus	11.2 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	Gate4AC11	Gate4AC11d	marker_locus	11.7 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	pAR0219	pAR0219c	marker_locus	25.3 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	G1112	G1112b	marker_locus	34.7 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	G1228	G1228	marker_locus	52.2 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	Gate2BC05	Gate2BC05	marker_locus	55.2 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	Coau2C11	Coau2C11b	marker_locus	58.9 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	Unig26B10	Unig26B10a	marker_locus	67 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	Unig26B10	Unig26B10b	marker_locus	72 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	Unig26F11	Unig26F11b	marker_locus	85.7 cM
Pima S-7 x im, F2 (2007).chr19/lgD08	G1004	G1004b	marker_locus	86.9 cM

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Map QTL

This map contains 51 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Pima S-7 x im, F2 (2007).chr26	qFLBL.im-F2_ch26	QTL	143.9 cM	166.1 cM	-

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