Pima S-7 x im, F2 (2007) | Cottongen

Map Overview


Name	Pima S-7 x im, F2 (2007)
Species	Gossypium barbadense x hirsutum
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	im Gh
Paternal parent	Pima S-7
Population size	124
Number of loci	364
Number of QTL	51
Number of linkage groups	39
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Pima S-7 x im, F2

population

Alias:	im-F2
Description:	genetic mapping
Population size:	124
Secondary id:	cdbpop_000053
Pedigree:	im, Gh / Pima S-7

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2007	Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH. Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics. 2007 Aug; 176(4):2577-88

Map Loci

This map contains 364 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Pima S-7 x im, F2 (2007).chr23	A1471	A1471b	marker_locus	127.4 cM
Pima S-7 x im, F2 (2007).chr23	Unig27B04	Unig27B04	marker_locus	150.4 cM
Pima S-7 x im, F2 (2007).chr23	A1707	A1707b	marker_locus	182.7 cM
Pima S-7 x im, F2 (2007).chr24/lgD03	A1783	A1783b	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr24/lgD03	Unig23G01	Unig23G01	marker_locus	23.3 cM
Pima S-7 x im, F2 (2007).chr24/lgD03	Gate2AC11	Gate2AC11b	marker_locus	30 cM
Pima S-7 x im, F2 (2007).chr24/lgD03	pAR0571	pAR0571	marker_locus	35.4 cM
Pima S-7 x im, F2 (2007).chr24/lgD03	G1074	G1074	marker_locus	52.5 cM
Pima S-7 x im, F2 (2007).chr24/lgD03	pGH244	pGH244b	marker_locus	55.7 cM
Pima S-7 x im, F2 (2007).chr24/lgD03	pAR09A08	PAR09A08b	marker_locus	67.4 cM
Pima S-7 x im, F2 (2007).chr24/lgD03.1	Gate3CA01	Gate3CA01b	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr24/lgD03.1	G1276	G1276c	marker_locus	19.6 cM
Pima S-7 x im, F2 (2007).chr24/lgD03.1	Gate3CA01	Gate3CA01c	marker_locus	39.6 cM
Pima S-7 x im, F2 (2007).chr25	pAR0237	pAR0237	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr25	Gafb17H13	Gafb17H13b	marker_locus	20 cM
Pima S-7 x im, F2 (2007).chr25	pAR0026	pAR0026b	marker_locus	37.7 cM
Pima S-7 x im, F2 (2007).chr25.1	pAR0897	pAR0897	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr25.1	Unig25H10	Unig25H10b	marker_locus	6.3 cM
Pima S-7 x im, F2 (2007).chr25.1	Gate1DD01	Gate1DD01b	marker_locus	10.9 cM
Pima S-7 x im, F2 (2007).chr25.1	G1099	G1099b	marker_locus	20.3 cM
Pima S-7 x im, F2 (2007).chr25.1	Unig23A07	Unig23A07	marker_locus	41.2 cM
Pima S-7 x im, F2 (2007).chr25.1	pAR0415	pAR0415	marker_locus	55.8 cM
Pima S-7 x im, F2 (2007).chr26	A1614	A1614	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr26	Unig22D07	Unig22D07	marker_locus	5.3 cM
Pima S-7 x im, F2 (2007).chr26	Gate2BG06	Gate2BG06b	marker_locus	25.9 cM

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Map QTL

This map contains 51 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Pima S-7 x im, F2 (2007).chr26	qFLBL.im-F2_ch26	QTL	143.9 cM	166.1 cM	-

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