pAR0571, pAR0571 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0571
Genbank IDCA993146
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993146
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:19345718..19346583 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:25958990..25959854 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:18571952..18572817 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:24083864..24084729 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:17916340..17917206 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_01chromosomeKI_01:10729412..10730275 -Gossypioides kirkii genome ISU_v3n/a
tig00003593_CRI-A2_v1.0.a1chromosometig00003593_CRI-A2_v1.0.a1:13947..14811 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:42646814..42647680 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:35450325..35451189 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:39421884..39422749 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:18516886..18517750 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:17786758..17787623 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:24699683..24700547 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:19078929..19079794 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:24674338..24675202 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:18656118..18656983 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:24528308..24529172 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:18644216..18645081 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:25111149..25112013 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:18997712..18998577 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:24972459..24973323 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold22115supercontigscaffold22115:32862..33727 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold22115supercontigscaffold22115:34874..35740 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15799supercontigscaffold15799:14413..15278 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:19177692..19178557 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:24224087..24224952 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:18933420..18934285 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:24097386..24098251 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:18909997..18910861 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:25733974..25734838 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:19777390..19778255 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:25152805..25153669 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:18893606..18894471 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:24236029..24236893 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:19354369..19355234 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:25268297..25269161 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:25731352..25732216 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:48383960..48384824 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:17815242..17816108 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:25647033..25647896 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:18674033..18674899 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:16145455..16146321 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:13880214..13881080 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:18385088..18385954 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:16822065..16823060 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:11980433..11981299 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:15261750..15262615 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:28731629..28732490 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:21558573..21559438 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:151530691..151531554 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomepAR0571:1..866 .
Chr02:19706607..19707473 -		n/a
Chr2chromosomepAR0571:1..866 .
Chr2:24678995..24679861 -		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch24_Dt.08N/A35.3pAR0571View
2Pima S-7 x im, F2 (2007)AD_ch24_Dt.08N/A35.4pAR0571View
3Pima S-7 x n2, F2 (2007)AD_ch24_Dt.08N/A35.3pAR0571View
4AD-genome wide Reference Map (2009)AD_ch04_At.04N/A116pAR0571View
5AD-genome wide Reference Map (2009)AD_ch08_At.08N/A45pAR0571View
6TM-1 x WT-936, F2 (2005)AD_ch08_At.08N/A49.1pAR0571View
7AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A175pAR0571View
8TM-1 x WT-936, F2 (2005)AD_ch24_Dt.08N/A46.6pAR0571View
9Palmeri x K-101, F2 (2007)AD_ch04_At.04N/A132.3pAR571aView
10Palmeri x K-101, F2 (2007)AD_ch24_Dt.08N/A54pAR571bView
Sequence
>pAR0571 ID=pAR0571; Name=pAR0571; organism=Gossypium hirsutum; type=genetic_marker; length=873bp
GGAAGAATACAGTTAATGTGTTTCTTTGATTGCTACTAACAAAATGTAAA
CTTAATAAATCTGCAAGGGGTCCTAACCTGTTACAATTGTACACTCTCCA
TGTTCAGTATGTGAGAAAAAAGGCAATTACAATGAAAAAAATTCTGCTTC
TTGTAACAATCGACTGCAAACAAGCTTTTGAGCTTTTGAATGTATGAAAG
AATCTTGCTGGATACAATCGGGGCTCTTGCTCTCTTCTTTTTCATGGCTG
ACTTCCGCTATTTTCATTAAGCCAAGGGATGTATCAGCTCAGCCAGTTTA
TCTGAATCAGGTTGGATCACCTGCTGGCTGCAAGTATCCTCATAAAATAA
TAGCTGTAGTGCACAATTAGAAAAGAAAAACACTGTTGGGTACAATGGTT
GAGCAGGCACTTCAACCAGTAAGGATTATCTGTTAGTTTTCATCTAACAT
CTCCATGTCTTGCATTTCCATGGGTTCAGGGAAAACTTCATTCGACAACC
TTTTACGTGAAGATGAGTGTTCAATTCCATCGCTGCCATGAGAACCTAGT
CTACCTGCCTGCCTAAAACCACTGAAACCCTCTCTGTTTTGGTGGCCTGG
GATGGTGGCACTCTCTGATGAGCTCTGTCGCCAACTACCAAAGAAGGCAG
AACCCCAAGATTGCCTAGACGATGTTGTTCTTAGCCTTGCGGAGCTGAAA
CTCTCCTCTCTTACTACTTTCAAAGGGTTTTCCAATGCTTTAAGAATATG
CTTCATTGAGGGTCGTTTAGAAGGCTTGGGGTTAAGGCATGACCTTGCCA
CGATTGCCATGGCCCATACCTCCTCCAATAGATCCTCATCTACTATCAAG
GATGGATCCATGATCTCTCGTGC