Pima S-7 x im, F2 (2007) | Cottongen

Map Overview


Name	Pima S-7 x im, F2 (2007)
Species	Gossypium barbadense x hirsutum
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	im Gh
Paternal parent	Pima S-7
Population size	124
Number of loci	364
Number of QTL	51
Number of linkage groups	39
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Pima S-7 x im, F2

population

Alias:	im-F2
Description:	genetic mapping
Population size:	124
Secondary id:	cdbpop_000053
Pedigree:	im, Gh / Pima S-7

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2007	Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH. Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics. 2007 Aug; 176(4):2577-88

Map Loci

This map contains 364 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Pima S-7 x im, F2 (2007).chr15.2	pAR08E03	PAR08E03a	marker_locus	13.4 cM
Pima S-7 x im, F2 (2007).chr15.2	pBAM291	pBAM291a	marker_locus	15.9 cM
Pima S-7 x im, F2 (2007).chr15.2	Unig26F09	Unig26F09b	marker_locus	18.7 cM
Pima S-7 x im, F2 (2007).chr15.2	pAR08E03	PAR08E03b	marker_locus	28.3 cM
Pima S-7 x im, F2 (2007).chr15.2	pGH248	pGH248b	marker_locus	49.6 cM
Pima S-7 x im, F2 (2007).chr16	A1619	A1619a	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr16	pAR0544	pAR0544	marker_locus	17.8 cM
Pima S-7 x im, F2 (2007).chr16	Unig25C01	Unig25C01a	marker_locus	24.5 cM
Pima S-7 x im, F2 (2007).chr16	pAR0291	pAR0291c	marker_locus	59.2 cM
Pima S-7 x im, F2 (2007).chr16	Gate4BG08	Gate4BG08b	marker_locus	78.7 cM
Pima S-7 x im, F2 (2007).chr16	A1182	A1182b	marker_locus	86.9 cM
Pima S-7 x im, F2 (2007).chr16	Gate1BH04	Gate1BH04	marker_locus	89.2 cM
Pima S-7 x im, F2 (2007).chr16	Gate2BF11	Gate2BF11	marker_locus	104.4 cM
Pima S-7 x im, F2 (2007).chr16	Unig25B05	Unig25B05	marker_locus	109.9 cM
Pima S-7 x im, F2 (2007).chr16	G1158	G1158b	marker_locus	136.1 cM
Pima S-7 x im, F2 (2007).chr16	Gate4CF04	Gate4CF04c	marker_locus	147 cM
Pima S-7 x im, F2 (2007).chr16	Gate4CF04	Gate4CF04b	marker_locus	147 cM
Pima S-7 x im, F2 (2007).chr17	pAR01-56	pAR1-56b	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr17	A1583	A1583	marker_locus	20.4 cM
Pima S-7 x im, F2 (2007).chr17.1	A1215	A1215	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr17.1	pAR01-08	pAR1-08	marker_locus	15.1 cM
Pima S-7 x im, F2 (2007).chr17.2	A1436	A1436	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr17.2	pAR0396	pAR0396	marker_locus	27.1 cM
Pima S-7 x im, F2 (2007).chr17.2	Unig24G02	Unig24G02b	marker_locus	34 cM
Pima S-7 x im, F2 (2007).chr17.2	G1258	G1258a	marker_locus	37.1 cM

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Map QTL

This map contains 51 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Pima S-7 x im, F2 (2007).chr26	qFLBL.im-F2_ch26	QTL	143.9 cM	166.1 cM	-

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