Pima S-7 x im, F2 (2007) | Cottongen

Map Overview


Name	Pima S-7 x im, F2 (2007)
Species	Gossypium barbadense x hirsutum
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	im Gh
Paternal parent	Pima S-7
Population size	124
Number of loci	364
Number of QTL	51
Number of linkage groups	39
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Pima S-7 x im, F2

population

Alias:	im-F2
Description:	genetic mapping
Population size:	124
Secondary id:	cdbpop_000053
Pedigree:	im, Gh / Pima S-7

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2007	Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH. Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics. 2007 Aug; 176(4):2577-88

Map Loci

This map contains 364 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Pima S-7 x im, F2 (2007).chr10.2	Gate1DG09	Gate1DG09a	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr10.2	Gate1DG09	Gate1DG09b	marker_locus	24.2 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	Gate4AC11	Gate4AC11a	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	Gate4AC11	Gate4AC11b	marker_locus	13.5 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	Gate4DB08	Gate4DB08	marker_locus	19.3 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	Gate2AC11	Gate2AC11a	marker_locus	26.2 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	pBAM422	pBAM422	marker_locus	31.9 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	Unig24A10	Unig24A10b	marker_locus	52.7 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	Gate1DG01	Gate1DG01a	marker_locus	56.3 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	pGH505	PGH505a	marker_locus	59.8 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	pAR0433	pAR0433	marker_locus	62.6 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	Gate4DA04	Gate4DA04	marker_locus	70.7 cM
Pima S-7 x im, F2 (2007).chr11/lgA03	Gate4CF12	Gate4CF12c	marker_locus	76.7 cM
Pima S-7 x im, F2 (2007).chr11/lgA03.1	Gate2CA09	Gate2CA09a	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr11/lgA03.1	pAR0570	pAR0570a	marker_locus	9.2 cM
Pima S-7 x im, F2 (2007).chr11/lgA03.1	pAR08B09	pAR08B09a	marker_locus	14.3 cM
Pima S-7 x im, F2 (2007).chr12	Unig23F10	Unig23F10	marker_locus	0 cM
Pima S-7 x im, F2 (2007).chr12	Gate4CA11	Gate4CA11	marker_locus	29.9 cM
Pima S-7 x im, F2 (2007).chr12	Gate2BG06	Gate2BG06a	marker_locus	33.3 cM
Pima S-7 x im, F2 (2007).chr12	Gate1CE12	Gate1CE12	marker_locus	38.3 cM
Pima S-7 x im, F2 (2007).chr12	Unig25D04	Unig25D04	marker_locus	43.6 cM
Pima S-7 x im, F2 (2007).chr12	A1210	A1210b	marker_locus	59.6 cM
Pima S-7 x im, F2 (2007).chr12	Unig24C11	Unig24C11b	marker_locus	59.6 cM
Pima S-7 x im, F2 (2007).chr12	Unig24G11	Unig24G11	marker_locus	63.5 cM
Pima S-7 x im, F2 (2007).chr12	Unig22H11	Unig22H11	marker_locus	80.8 cM

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Map QTL

This map contains 51 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Pima S-7 x im, F2 (2007).chr26	qFLBL.im-F2_ch26	QTL	143.9 cM	166.1 cM	-

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