HAU1918, HAU1918 (genetic_marker) gossypium spp

Marker Overview
NameHAU1918
Genbank IDDW228510
TypeSSR
SpeciesGossypium spp.
Source SequenceDW228510
Source TypeEST
Repeat Motif(CACCAG)5
PCR ConditionAnnealing temperature: 57.3
Primer 1HAU1918_F: TTCCTACTGCTCCTCCTCAG
Primer 2HAU1918_R: ATATTTGTGAGGGGCAAATG
Product Length213
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDW228510
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:35794366..35794578 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:61564008..61564208 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:33909373..33909573 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:57417143..57417343 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:27807885..27808085 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:26350577..26350783 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:63876013..63876213 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:15658158..15658358 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:26358356..26358553 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:16004521..16004733 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:34095301..34095513 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:56472941..56473141 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:35971960..35972172 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:61400353..61400553 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:35782161..35782373 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:63429250..63429450 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:35705262..35705474 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:63086126..63086326 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:33784419..33784619 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:60018114..60018314 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7920supercontigscaffold7920:123610..123810 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold39666supercontigscaffold39666:34022..34222 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
D09chromosomeD09:37144493..37144693 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:59331162..59331362 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:34719280..34719486 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:58980544..58980744 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:36056359..36056565 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:61957051..61957251 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:35345529..35345735 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:59243112..59243312 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:37282889..37283101 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:64434405..64434605 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:63388338..63388538 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:66540883..66541083 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:34007691..34007891 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:50847470..50847670 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:34321323..34321523 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:27721650..27721862 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:23554381..23554581 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:35782781..35782987 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:19069976..19070176 +Gossypium gossypioides (D6) genome ISU_v1n/a
E09chromosomeE09:22959987..22960184 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:52463449..52463649 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:106302586..106302786 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr06chromosomeHAU1918:1..542 .
Chr06:35180927..35181869 +		n/a
Chr6chromosomeHAU1918:1..542 .
Chr6:24476110..24477052 +		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DW228510DW228510Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A35.19HAU1918aView
2Emian-22 x 3-79, BC1 (2011)AD_ch23_Dt.09N/A67.91HAU1918bView
3Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A26.9HAU1918View
4Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A43HAU1918View
5DH962 X Ji Mian 5, F2 (2015)AD_ch09_At.09N/A52.96HAU1918View
6DH962 X Ji Mian 5, F2 (2015)AD_ch23_Dt.09N/A52.96HAU1918View
70-153 x sGK9708, RIL (2016)AD_ch23_Dt.09N/A90.9HAU1918View
8DH962 x Ji Mian 5, RIL (2015)AD_ch09_At.09N/A20.2HAU1918View
9DH962 x Ji Mian 5, RIL (2015)AD_ch23_Dt.09N/A20.2HAU1918View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch23_Dt.09N/A73.8HAU1918View
11CCRI-35 x Yumian-1, RIL (2015)AD_ch23_Dt.09N/A79.8HAU1918View
12CCRI-36 x G2005, RIL (2016)AD_ch23_Dt.09N/A83.1HAU1918View
13LMY22 x LY343, RIL (2020)D09N/A86.97HAU1918View
14CCRI-35 x Yumian-1, RIL (2017)AD_ch23_Dt.09N/A107.75HAU1918View
15MGG-293-793, MAGIC (2018)AD_ch22_Dt.04N/A116.3HAU1918bView
16MGG-293-793, MAGIC (2018)AD_ch23_Dt.09N/A116.28HAU1918bView
Sequence
>HAU1918 ID=HAU1918; Name=HAU1918; organism=Gossypium spp.; type=genetic_marker; length=213bp
TTCCTACTGCTCCTCCTCAGTCACCAGCACCAGCACCAGCACCAGCACCA
CCTCCCGCAGCTCAAGCGACCCCACAAATACCACCGAATGATCCTGCAGC
TCTACTAGCTGGTTTGCTGTCGTGAAAATGGAAGATTTGTTCAGTTTACA
CTTAGAAACCTTGGTTTCTATACTCTGCCGGCCACCCATTTGGCATTTGC
CCCTCACAAATAT