TMB0403, TMB0403 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0403
AliasTMP01
Genbank IDBV679356
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679356.1
Source Typegenomic
Repeat Motif(TA)7+(CA)12
PCR ConditionAnnealing temperature: 55
Primer 1TMB0403_F: TAGACGTTCCAGTCCGTTCG
Primer 2TMB0403_R: TTGTACCTTGTCCCGGTCTC
Product Length195
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679356
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:6910219..6910413 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:41318045..41318233 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr9chromosomeDt_chr9:11182294..11182488 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3551_A13supercontigscaffold3551_A13:557257..557451 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:43795096..43795290 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:42155586..42155778 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:41325117..41325309 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1740supercontigscaffold1740:488537..488725 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1740supercontigscaffold1740:489529..489717 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:41743575..41743763 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:44247334..44247522 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:43366908..43367098 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:45167695..45167885 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:42909511..42909699 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:43710201..43710395 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:76329498..76329686 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679356.1BV679356.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch13_At.13N/A87.4TMP01View
2H18 x TM-1, F2 (2005)AD_ch13_At.13N/A80.7TMP01View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch13_At.13N/A56.5TMP01View
4TM-1 x 3-79, RIL (2012)AD_ch13_At.13N/A68.26tmb0403View
5AD-genome wide Reference Map (2009)AD_ch13_At.13N/A113tmb0403View
6Yumian-1 x T586, RIL (2006)AD_ch13_At.13N/A47.8tmb0403View
7DH962 x Jinmian-6, F2 (2009)AD_ch13_At.13N/A88.4tmb0403View
8DH962 x Jinmian-6, F2 (2009)AD_ch13_At.13N/A88.4tmb0403View
9Yumian-1 x T586, RIL (2015)AD_ch13_At.13N/A55.9tmb0403View
10DH962 X Ji Mian 5, F2 (2015)AD_ch13_At.13N/A32.26tmb0403View
11TM-1 x 3-79, RIL (2014)AD_ch13_At.13N/A64.9tmb0403View
12DH962 x Ji Mian 5, RIL (2015)AD_ch13_At.13N/A16.4tmb0403View
13TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A63.3TMP01-200View
14Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch13_At.13N/A36.1TMP01-200View
15TM-1 x Hai-7124, BC1 (2007)AD_ch13_At.13N/A63.2TMP01-200View
16TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A79.3TMP01-200View
17Yumian-1 x T586, RIL (2009)AD_ch13_At.13N/A34.9TMB0403/195y(C13)View
18TM-1 x 3-79, RIL (2012.v3)AD_ch13_At.13N/A64.91TMB0403View
Sequence
>TMB0403 ID=TMB0403; Name=TMB0403; organism=Gossypium hirsutum; type=genetic_marker; length=195bp
TAGACGTTCCAGTCCGTTCGTGTTAGTACGAGGTAAGTTTATAAGTAAAT
AAATGTTGTTAAATTGAAATGTATGTACATTATATGTGCTAAATTGAGTT
GTAAAGAAATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGACT
ATTGTAACACCCCTTACCCGTACTCGAGACCGGGACAAGGTACAA