MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_5727524	Chr08_5727523	marker_locus	59.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_7374999	Chr08_7374998	marker_locus	67.06 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_7573492	Chr08_7573491	marker_locus	70.85 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_7634097	Chr08_7634096	marker_locus	75.28 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_34886958	Chr08_34886958	marker_locus	91.08 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_36826478	Chr08_36826478	marker_locus	96.71 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_37181081	Chr08_37181080	marker_locus	98.02 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_37739816	Chr08_37739815	marker_locus	100.03 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_38036534	Chr08_38036534	marker_locus	100.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_38492635	Chr08_38492634	marker_locus	103.29 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_38745062	Chr08_38745062	marker_locus	105.93 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_38676325	Chr08_38676324	marker_locus	106.69 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_39017176	Chr08_39017175	marker_locus	111.9 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_44924679	Chr08_44924678	marker_locus	130.75 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_45498913	Chr08_45498912	marker_locus	135.35 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr03_24851041	Chr03_24851041	marker_locus	139.75 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_48986974	Chr08_48986973	marker_locus	148.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_45927006	Chr08_45927005	marker_locus	155.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_46063128	Chr08_46063127	marker_locus	161.3 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5Chr08_46000690	Chr08_46000689	marker_locus	164.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_46606868	Chr08_46606868	marker_locus	165.09 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_48000120	Chr08_48000119	marker_locus	167.54 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_47740955	Chr08_47740954	marker_locus	168.41 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5Chr08_45835369	Chr08_45835368	marker_locus	171.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_45212863	Chr08_45212863	marker_locus	174.5 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)