MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_4702574	Chr04_4702573	marker_locus	59.2 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_4868182	Chr04_4868182	marker_locus	60.71 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_4966513	Chr04_4966512	marker_locus	61.57 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_5235060	Chr04_5235060	marker_locus	62.65 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr11_50214505	Chr11_50214505	marker_locus	65.09 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_7283997	Chr04_7283996	marker_locus	71.74 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_7361421	Chr04_7361421	marker_locus	71.96 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_7768592	Chr04_7768591	marker_locus	73.26 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_7670119	Chr04_7670119	marker_locus	73.47 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5Chr04_10239470	Chr04_10239469	marker_locus	77.09 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_10469309	Chr04_10469308	marker_locus	78.88 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_11581369	Chr04_11581368	marker_locus	80.45 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5Chr04_10672223	Chr04_10672222	marker_locus	80.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_18097226	Chr04_18097226	marker_locus	82 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_18349275	Chr04_18349274	marker_locus	82.22 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_20963949	Chr04_20963949	marker_locus	82.66 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_17701952	Chr04_17701951	marker_locus	83.09 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_16632743	Chr04_16632743	marker_locus	83.53 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_18619555	Chr04_18619555	marker_locus	89.69 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5Chr04_40649914	Chr04_40649913	marker_locus	103.31 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5Chr04_45325145	Chr04_45325144	marker_locus	112.88 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_44766181	Chr04_44766180	marker_locus	116.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_42875807	Chr04_42875807	marker_locus	125.99 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_43622547	Chr04_43622546	marker_locus	127.07 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_48766391	Chr04_48766391	marker_locus	142.48 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)