MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_39679302	Chr06_39679301	marker_locus	158.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_40510547	Chr06_40510546	marker_locus	163.3 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_40754330	Chr06_40754330	marker_locus	164.61 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_41161766	Chr06_41161765	marker_locus	165.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_41568681	Chr06_41568680	marker_locus	166.79 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_41550443	Chr06_41550443	marker_locus	168.51 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_41841416	Chr06_41841415	marker_locus	170.95 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_42202337	Chr06_42202336	marker_locus	172.71 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr01_31085237	Chr01_31085237	marker_locus	176.84 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_43124844	Chr06_43124843	marker_locus	182.29 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_45022405	Chr06_45022404	marker_locus	190.92 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_44813365	Chr06_44813364	marker_locus	192.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5Chr06_46455739	Chr06_46455738	marker_locus	199.35 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5Chr06_46716473	Chr06_46716472	marker_locus	206.61 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5Chr06_46214466	Chr06_46214465	marker_locus	212.24 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_44088185	Chr06_44088184	marker_locus	220.65 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_47522484	Chr06_47522483	marker_locus	235.26 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_47412228	Chr06_47412227	marker_locus	236.82 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_47820415	Chr06_47820414	marker_locus	246.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_48139723	Chr06_48139722	marker_locus	248.19 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_48729925	Chr06_48729925	marker_locus	255.94 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_49605776	Chr06_49605775	marker_locus	264.86 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_50376484	Chr06_50376484	marker_locus	271.05 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C23_LG36	CSIRO_D5chr06_50658481	Chr06_50658481	marker_locus	275.93 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5Chr04_1902754	Chr04_1902753	marker_locus	0 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)