MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_49763093	Chr04_49763092	marker_locus	145.95 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_53368897	Chr04_53368896	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_55520053	Chr04_55520052	marker_locus	7.75 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_54790570	Chr04_54790569	marker_locus	17.73 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_57029013	Chr04_57029013	marker_locus	26.48 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_56084431	Chr04_56084430	marker_locus	32.44 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_56407038	Chr04_56407037	marker_locus	33.87 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_58113429	Chr04_58113429	marker_locus	44.44 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_59310546	Chr04_59310545	marker_locus	50.81 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG32	CSIRO_D5chr04_60262551	Chr04_60262550	marker_locus	57.52 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5Chr10_948303	Chr10_948302	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_677029	Chr10_677028	marker_locus	2.66 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_115945	Chr10_115944	marker_locus	11.62 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5Chr10_306800	Chr10_306799	marker_locus	13.62 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr01_48295376	Chr01_48295375	marker_locus	34.59 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_2471870	Chr10_2471869	marker_locus	42.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_4706252	Chr10_4706251	marker_locus	56.54 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_5062627	Chr10_5062626	marker_locus	60.67 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_5356190	Chr10_5356189	marker_locus	64.55 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_5545786	Chr10_5545785	marker_locus	72.75 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_6169537	Chr10_6169536	marker_locus	79 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_7116071	Chr10_7116070	marker_locus	82.37 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_8232603	Chr10_8232602	marker_locus	84.32 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5Chr10_8092055	Chr10_8092054	marker_locus	84.74 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5Chr10_8569037	Chr10_8569036	marker_locus	86.06 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)