MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_1695595	Chr04_1695594	marker_locus	0.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_345280	Chr04_345279	marker_locus	12.18 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_588317	Chr04_588316	marker_locus	13.04 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_379429	Chr04_379428	marker_locus	14.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_974582	Chr04_974581	marker_locus	20.34 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_1160566	Chr04_1160565	marker_locus	22.41 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_1030909	Chr04_1030908	marker_locus	23.7 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_688083	Chr04_688083	marker_locus	26.33 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG30	CSIRO_D5chr04_451629	Chr04_451629	marker_locus	28.51 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_21154086	Chr04_21154085	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_10585011	Chr04_10585010	marker_locus	3.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_9068238	Chr04_9068237	marker_locus	6.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_7102856	Chr04_7102856	marker_locus	10.52 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_5833714	Chr04_5833713	marker_locus	15.68 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5Chr04_5580885	Chr04_5580884	marker_locus	16.99 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_4021188	Chr04_4021187	marker_locus	26.3 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_3766626	Chr04_3766626	marker_locus	28.48 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_3285737	Chr04_3285736	marker_locus	35.42 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_3188754	Chr04_3188753	marker_locus	36.53 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_2663864	Chr04_2663863	marker_locus	44.61 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_2507774	Chr04_2507773	marker_locus	45.24 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5Chr04_2833630	Chr04_2833629	marker_locus	48.11 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_3510448	Chr04_3510447	marker_locus	52.94 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_3847130	Chr04_3847129	marker_locus	54.5 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C24_LG31	CSIRO_D5chr04_4212220	Chr04_4212219	marker_locus	57.23 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)