MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_28833177	Chr10_28833177	marker_locus	136.52 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_35883888	Chr10_35883887	marker_locus	136.73 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_30100859	Chr10_30100859	marker_locus	139.66 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5Chr10_29889228	Chr10_29889227	marker_locus	142.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_35688074	Chr10_35688073	marker_locus	143 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5Chr10_37109714	Chr10_37109713	marker_locus	147.86 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_34515290	Chr10_34515290	marker_locus	150.5 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_38594917	Chr10_38594916	marker_locus	154.38 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_32745875	Chr10_32745875	marker_locus	155.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5Chr10_28530200	Chr10_28530199	marker_locus	156.1 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_23069295	Chr10_23069295	marker_locus	157.18 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_38496697	Chr10_38496696	marker_locus	158.72 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_28147637	Chr10_28147636	marker_locus	159.37 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_35058856	Chr10_35058855	marker_locus	160.24 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_54310485	Chr10_54310485	marker_locus	171.51 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C25_LG22	CSIRO_D5chr10_53683006	Chr10_53683006	marker_locus	176.32 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_1327570	Chr08_1327569	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_2002574	Chr08_2002573	marker_locus	8.75 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5Chr08_5589883	Chr08_5589882	marker_locus	23.87 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_4431202	Chr08_4431201	marker_locus	25.59 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5Chr08_2819178	Chr08_2819177	marker_locus	36.32 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5Chr08_2546458	Chr08_2546457	marker_locus	42.57 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_3275725	Chr08_3275724	marker_locus	49.62 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_3747588	Chr08_3747587	marker_locus	53.97 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C26_LG50	CSIRO_D5chr08_5464933	Chr08_5464932	marker_locus	59.15 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)