TM-1 x WT-936, F2 (2005)

Map Overview


Name	TM-1 x WT-936, F2 (2005)
Species	Gossypium hirsutum x tomentosum
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	TM-1
Paternal parent	WT-936
Population size	82
Number of loci	589
Number of QTL	11
Number of linkage groups	51
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

TM-1 x WT-936, F2

population

Alias:	TW-F2
Description:	genetic mapping
Population size:	82
Secondary id:	cdbpop_000062
Pedigree:	TM-1 / WT-936

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2005	Waghmare V, Rong J, Rogers C, Pierce G, Wendel J, Paterson A. Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum. Theoretical and applied genetics. 2005; 111(4):665-676.
2011	Zhang Z, Rong J, Waghmare VN, Chee PW, May OL, Wright RJ, Gannaway JR, Paterson AH. QTL alleles for improved fiber quality from a wild Hawaiian cotton, Gossypium tomentosum. Theoretical and applied genetics. 2011 Nov; 123(7):1075-88

Map Loci

This map contains 589 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
TM-1 x WT-936, F2 (2005).chr10.1	pAR0709	par0709	marker_locus	83 cM
TM-1 x WT-936, F2 (2005).chr10.2	PXP1-30	pxp1-30	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr10.2	PXP4-15	pxp4-15	marker_locus	4.8 cM
TM-1 x WT-936, F2 (2005).chr10.2	A1183	A1183	marker_locus	10.1 cM
TM-1 x WT-936, F2 (2005).chr10.2	A1520	a1520	marker_locus	27.1 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.1	pVNC149	PVNC149	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.1	pAR0101	pAR0101	marker_locus	20.2 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.1	pGH648	pgh648	marker_locus	23.5 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.1	pAR0111	pAR0111	marker_locus	23.5 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.1	pAR0044	pAR0044	marker_locus	28.9 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.1	pGH243	pGH243	marker_locus	42.4 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.2	pBAM422	pBAM422	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.2	pAR0038	pAR0038	marker_locus	4.1 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.2	pBAM422	pBAM422	marker_locus	9 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.2	pgh659	pgh659	marker_locus	9 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.2	pGH312	pGH312	marker_locus	12.2 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	A1672	A1672	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	G1124	G1124	marker_locus	14.5 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	A1400	A1400	marker_locus	17.7 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	pAR0024	pAR0024	marker_locus	21 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	pAR0141	pAR0141	marker_locus	21 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	pAR0024	pAR0024	marker_locus	21.6 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	pAR0141	pAR0141	marker_locus	21.6 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	pAR0319	pAR0319	marker_locus	21.6 cM
TM-1 x WT-936, F2 (2005).chr11/lgA03.3	G1095	G1095	marker_locus	23 cM

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Map QTL

This map contains 11 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
TM-1 x WT-936, F2 (2005).chr02	qL3W.TW-F2_ch02	QTL	58 cM	59 cM	-
TM-1 x WT-936, F2 (2005).chr04	qL2L3D.TW-F2_ch04	QTL	68 cM	82 cM	-
TM-1 x WT-936, F2 (2005).chr04	qL1L2D.TW-F2_ch04	QTL	129 cM	133.5 cM	-
TM-1 x WT-936, F2 (2005).chr06.1	qL3W.TW-F2_ch06	QTL	60 cM	75 cM	-
TM-1 x WT-936, F2 (2005).chr09	qL1W.TW-F2_ch09	QTL	48 cM	50 cM	-
TM-1 x WT-936, F2 (2005).chr09	qL2W.TW-F2_ch09	QTL	48 cM	50 cM	-
TM-1 x WT-936, F2 (2005).chr10.1	qLBN.TW-F2_ch10	QTL	47 cM	55 cM	-
TM-1 x WT-936, F2 (2005).chr15.2	qL2W.TW-F2_ch15	QTL	0 cM	15 cM	-
TM-1 x WT-936, F2 (2005).chr15.1	qL1L2A.TW-F2_ch15	QTL	140 cM	150 cM	-
TM-1 x WT-936, F2 (2005).chr18.1	qLBN.TW-F2_ch18	QTL	2.6 cM	5 cM	-
TM-1 x WT-936, F2 (2005).chr20	qLBN.TW-F2_ch20	QTL	6.8 cM	27 cM	-

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TM-1 x WT-936, F2 (2005)