PXP4-15, PXP4-15 (genetic_marker) Gossypium barbadense

Marker Overview
NamePXP4-15
Genbank IDCA992645
TypeRFLP
SpeciesGossypium barbadense
GermplasmPima S-6
Source TypecDNA
Restriction EnzymeEcoRV
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992645
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:55201091..55201547 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:97729206..97729662 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:52787092..52787548 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:95390614..95391069 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:11991077..11991533 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:8382515..8382968 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:19378616..19379072 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:12542274..12542730 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:123015409..123015865 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:57798533..57798989 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:6462121..6462577 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:52578998..52579454 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:87239338..87239794 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:55092114..55092570 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:101051442..101051898 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:55116324..55116780 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:101993607..101994063 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:53788293..53788749 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:101174416..101174872 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:52083073..52083529 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:96268745..96269201 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:55690271..55690726 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt10chromosomeDt10:55691606..55692062 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4516supercontigscaffold4516:77022..77477 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6977supercontigscaffold6977:482855..483310 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6977supercontigscaffold6977:484190..484646 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:52752542..52752998 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:95690057..95690512 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:53762466..53762922 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:97312265..97312720 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:52705080..52705536 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:96988311..96988766 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:54873245..54873701 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:104565594..104566050 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:53982835..53983291 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:98737559..98738014 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:55149173..55149629 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:104237309..104237765 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:110894378..110894834 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:105155578..105156034 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:50352325..50352781 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:17884442..17884879 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:51894202..51894658 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:43001505..43001961 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:34628144..34628600 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:37074824..37075279 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11_3447404chromosomeChr11_3447404:5161..5617 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:36884237..36884692 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:19028947..19029403 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:80090135..80090591 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomePXP4-15:1..456 .
Chr11:50738906..50739362 -		n/a
Chr11chromosomePXP4-15:1..456 .
Chr11:36075859..36076315 -		n/a
Germplasm
Stock NameType
Pima S-6accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch20_Dt.10N/A94.6PXP4_15View
2AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A67pxp4-15View
3TM-1 x WT-936, F2 (2005)AD_ch10_At.10N/A4.8pxp4-15View
Sequence
>PXP4-15 ID=PXP4-15; Name=PXP4-15; organism=Gossypium barbadense; type=genetic_marker; length=456bp
AACTTGTAAGAATCCAGCCTACAACCAATTACTAATAAATGAAATGGTCC
AACTGAAAATAATAGTTAGGATCAGCAAACTCAAAACTTAACCGATGATG
GCATCAATTCTACTAAACCAGTACAACTACTTTTAGTCCAAACTCCCAAA
CTTGAATAATCTTAAACTGAATCTTTCAACTTGCTATTTATACTTTAGGC
AAAAGGAAAATTATGAGACTAAAACAGAAGTACAATCCCTTTCAACAAGT
AGCCTAGTTTCAGAGGTTCTGTAGTCTCCTTAGAACAACTATTAATTCTA
AATCCCCCATATCTAATAGTTTAATTAACATAAATTCCATGCTGTCTCCT
AAATGACTCCTCTTGGTTTCTGCAACAAGTAGCCTCAAACCTATGATCTT
TACCACAACCACACTCCAGTCTTATCCCTTGGGCTAGCCCCAAATTGCAA
ACATAG