TM-1 x WT-936, F2 (2005)

Map Overview


Name	TM-1 x WT-936, F2 (2005)
Species	Gossypium hirsutum x tomentosum
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	TM-1
Paternal parent	WT-936
Population size	82
Number of loci	589
Number of QTL	11
Number of linkage groups	51
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

TM-1 x WT-936, F2

population

Alias:	TW-F2
Description:	genetic mapping
Population size:	82
Secondary id:	cdbpop_000062
Pedigree:	TM-1 / WT-936

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2005	Waghmare V, Rong J, Rogers C, Pierce G, Wendel J, Paterson A. Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum. Theoretical and applied genetics. 2005; 111(4):665-676.
2011	Zhang Z, Rong J, Waghmare VN, Chee PW, May OL, Wright RJ, Gannaway JR, Paterson AH. QTL alleles for improved fiber quality from a wild Hawaiian cotton, Gossypium tomentosum. Theoretical and applied genetics. 2011 Nov; 123(7):1075-88

Map Loci

This map contains 589 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
TM-1 x WT-936, F2 (2005).chr15.2	A1720	A1720	marker_locus	41.2 cM
TM-1 x WT-936, F2 (2005).chr15.3	pAR0050	pAR0050	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr15.3	pAR0935	pAR0935	marker_locus	33.7 cM
TM-1 x WT-936, F2 (2005).chr15.3	pAR0264	par0264	marker_locus	39.6 cM
TM-1 x WT-936, F2 (2005).chr16	pVNC190	pVNC190	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr16	pAR04-09	pAR4-09	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr16	P11-72	p11-72	marker_locus	4 cM
TM-1 x WT-936, F2 (2005).chr16	A1619	A1619	marker_locus	5.1 cM
TM-1 x WT-936, F2 (2005).chr16	A1625	A1625	marker_locus	23.6 cM
TM-1 x WT-936, F2 (2005).chr16	par0669	par0669	marker_locus	23.6 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0057	pAR0057	marker_locus	26 cM
TM-1 x WT-936, F2 (2005).chr16	M16-106	m16-106	marker_locus	33.3 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0173	PAR0173	marker_locus	35.7 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0285	pAR0285	marker_locus	46.1 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0161	pAR0161	marker_locus	46.1 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0022	pAR0022	marker_locus	53.8 cM
TM-1 x WT-936, F2 (2005).chr16	P05-06	p05-06	marker_locus	64.4 cM
TM-1 x WT-936, F2 (2005).chr16	A1311	A1311	marker_locus	68.1 cM
TM-1 x WT-936, F2 (2005).chr16	pGH646	pGH646	marker_locus	75.2 cM
TM-1 x WT-936, F2 (2005).chr16	par0605	par0605	marker_locus	75.2 cM
TM-1 x WT-936, F2 (2005).chr16	G1261	g1261	marker_locus	92.3 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0825	pAR0825	marker_locus	94.3 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0197	par0197	marker_locus	106.8 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0219	par0219	marker_locus	107.7 cM
TM-1 x WT-936, F2 (2005).chr16	pAR0219	pAR0219	marker_locus	108.8 cM

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Map QTL

This map contains 11 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
TM-1 x WT-936, F2 (2005).chr02	qL3W.TW-F2_ch02	QTL	58 cM	59 cM	-
TM-1 x WT-936, F2 (2005).chr04	qL2L3D.TW-F2_ch04	QTL	68 cM	82 cM	-
TM-1 x WT-936, F2 (2005).chr04	qL1L2D.TW-F2_ch04	QTL	129 cM	133.5 cM	-
TM-1 x WT-936, F2 (2005).chr06.1	qL3W.TW-F2_ch06	QTL	60 cM	75 cM	-
TM-1 x WT-936, F2 (2005).chr09	qL1W.TW-F2_ch09	QTL	48 cM	50 cM	-
TM-1 x WT-936, F2 (2005).chr09	qL2W.TW-F2_ch09	QTL	48 cM	50 cM	-
TM-1 x WT-936, F2 (2005).chr10.1	qLBN.TW-F2_ch10	QTL	47 cM	55 cM	-
TM-1 x WT-936, F2 (2005).chr15.2	qL2W.TW-F2_ch15	QTL	0 cM	15 cM	-
TM-1 x WT-936, F2 (2005).chr15.1	qL1L2A.TW-F2_ch15	QTL	140 cM	150 cM	-
TM-1 x WT-936, F2 (2005).chr18.1	qLBN.TW-F2_ch18	QTL	2.6 cM	5 cM	-
TM-1 x WT-936, F2 (2005).chr20	qLBN.TW-F2_ch20	QTL	6.8 cM	27 cM	-

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TM-1 x WT-936, F2 (2005)