pAR0935, pAR0935 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0935
Genbank IDCA993597
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993597
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:1593742..1594138 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:2106861..2107268 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:1533707..1534103 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:1601478..1601886 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:1413753..1414149 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:1602663..1603073 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:59051347..59051750 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:2181287..2181692 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold783.1supercontigscaffold783.1:540526..540922 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2140.1supercontigscaffold2140.1:49937..50344 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:1516391..1516787 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:1296309..1296716 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:1568431..1568827 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:1838156..1838563 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:1520107..1520503 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:1789347..1789754 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:1546434..1546830 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:1857942..1858349 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:1358657..1359053 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:1823339..1823746 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:1783175..1783571 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15070supercontigscaffold15070:211308..211716 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13138supercontigscaffold13138:74929..75325 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:1628610..1629006 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:1596360..1596768 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:1561140..1561536 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:1594086..1594494 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:1661295..1661691 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:1830541..1830948 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:1484157..1484553 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:1645144..1645552 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:1758012..1758408 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:1639255..1639662 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:1541299..1541695 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:1856436..1856843 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:1604757..1605167 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:1535682..1536092 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:1391259..1391655 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:1652149..1652547 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:1573879..1574284 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:1702826..1703222 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:1215979..1216384 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:1166136..1166539 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:1270396..1270804 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:1775286..1775688 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:1401400..1401798 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomepAR0935:1..397 .
Chr02:1390527..1390923 -		n/a
Chr8chromosomepAR0935:1..397 .
Chr8:21112965..21113361 +		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch15_Dt.01N/A0pAR0935View
2TM-1 x WT-936, F2 (2005)AD_ch15_Dt.01N/A33.7pAR0935View
3AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A194pAR0935View
4SMA-4 x A1-97, F2 (2005)A_SA_lg05N/A46.5pAR0935View
5Palmeri x K-101, F2 (2007)AD_ch15_Dt.01N/A123.2pAR935View
Sequence
>pAR0935 ID=pAR0935; Name=pAR0935; organism=Gossypium hirsutum; type=genetic_marker; length=407bp
GAACAAAAATAATAATAAACTATCCATAAAAAGAAGTTCAAAAGCATCTT
AGAACGTACAAAAGAGAAAGCACCCAAAATCAAGAATCAAATGCTTAAAC
TCTGTAAACCATCCAACATCAATGTCATATTCATAAATCAATCATCTAAA
CAATCAAAATAATAAACTAAAAAATCAAATTAAAATCAGCACGACTTTCT
CTAAGATCAAAGGAAAAAAAAATCGAAGAACATGATCTTTGAACTAAAAT
CAACAAGGGATTTGATCAATGAACCATCTAAGAACTTTAATAGGAAGCTT
GATGAGACTCACTGCGAAATTGGCTAGTCCAGCACAACAAATACAGCATG
GGCAAAGACAACTCAATATAGTCCTGCAAAAAAAATTTTAAAACAACTCG
AGACTAG