TM-1 x WT-936, F2 (2005)

Map Overview


Name	TM-1 x WT-936, F2 (2005)
Species	Gossypium hirsutum x tomentosum
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	TM-1
Paternal parent	WT-936
Population size	82
Number of loci	589
Number of QTL	11
Number of linkage groups	51
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

TM-1 x WT-936, F2

population

Alias:	TW-F2
Description:	genetic mapping
Population size:	82
Secondary id:	cdbpop_000062
Pedigree:	TM-1 / WT-936

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2005	Waghmare V, Rong J, Rogers C, Pierce G, Wendel J, Paterson A. Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum. Theoretical and applied genetics. 2005; 111(4):665-676.
2011	Zhang Z, Rong J, Waghmare VN, Chee PW, May OL, Wright RJ, Gannaway JR, Paterson AH. QTL alleles for improved fiber quality from a wild Hawaiian cotton, Gossypium tomentosum. Theoretical and applied genetics. 2011 Nov; 123(7):1075-88

Map Loci

This map contains 589 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
TM-1 x WT-936, F2 (2005).chr22	pAR0078	pAR0078	marker_locus	73.2 cM
TM-1 x WT-936, F2 (2005).chr22	pVNC218	pVNC218	marker_locus	83.9 cM
TM-1 x WT-936, F2 (2005).chr22	pAR0968	par0968	marker_locus	111 cM
TM-1 x WT-936, F2 (2005).chr22	P05-06	p05-06	marker_locus	128.8 cM
TM-1 x WT-936, F2 (2005).chr23	pVNC121	pVNC121	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr23	A1737	A1737	marker_locus	3 cM
TM-1 x WT-936, F2 (2005).chr23	p01-10	p01-10	marker_locus	12.9 cM
TM-1 x WT-936, F2 (2005).chr23	pAR0547	pAR0547	marker_locus	25.2 cM
TM-1 x WT-936, F2 (2005).chr23	pVNC163	pVNC163	marker_locus	26.9 cM
TM-1 x WT-936, F2 (2005).chr23	A1548	A1548	marker_locus	26.9 cM
TM-1 x WT-936, F2 (2005).chr23	pAR0127	pAR0127	marker_locus	37 cM
TM-1 x WT-936, F2 (2005).chr23	G1238	G1238	marker_locus	37.7 cM
TM-1 x WT-936, F2 (2005).chr23	P12-12	P12-12	marker_locus	42.2 cM
TM-1 x WT-936, F2 (2005).chr23	pAR0083	pAR0083	marker_locus	51.4 cM
TM-1 x WT-936, F2 (2005).chr23	pAR0328	par0328	marker_locus	73.7 cM
TM-1 x WT-936, F2 (2005).chr23	A1270	A1270	marker_locus	73.7 cM
TM-1 x WT-936, F2 (2005).chr23	pAR0278	pAR0278	marker_locus	87.9 cM
TM-1 x WT-936, F2 (2005).chr23	G1267	G1267	marker_locus	113.6 cM
TM-1 x WT-936, F2 (2005).chr23	pAR0808	par0808	marker_locus	124.6 cM
TM-1 x WT-936, F2 (2005).chr23	G1267	G1267	marker_locus	125.1 cM
TM-1 x WT-936, F2 (2005).chr23	A1606	A1606	marker_locus	131.9 cM
TM-1 x WT-936, F2 (2005).chr23	pAR0963	pAR0963	marker_locus	134.7 cM
TM-1 x WT-936, F2 (2005).chr23	pAR0209	pAR0209	marker_locus	150.6 cM
TM-1 x WT-936, F2 (2005).chr24/lgD03.1	A1135	A1135	marker_locus	0 cM
TM-1 x WT-936, F2 (2005).chr24/lgD03.1	A1783	A1783	marker_locus	0 cM

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Map QTL

This map contains 11 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
TM-1 x WT-936, F2 (2005).chr02	qL3W.TW-F2_ch02	QTL	58 cM	59 cM	-
TM-1 x WT-936, F2 (2005).chr04	qL2L3D.TW-F2_ch04	QTL	68 cM	82 cM	-
TM-1 x WT-936, F2 (2005).chr04	qL1L2D.TW-F2_ch04	QTL	129 cM	133.5 cM	-
TM-1 x WT-936, F2 (2005).chr06.1	qL3W.TW-F2_ch06	QTL	60 cM	75 cM	-
TM-1 x WT-936, F2 (2005).chr09	qL1W.TW-F2_ch09	QTL	48 cM	50 cM	-
TM-1 x WT-936, F2 (2005).chr09	qL2W.TW-F2_ch09	QTL	48 cM	50 cM	-
TM-1 x WT-936, F2 (2005).chr10.1	qLBN.TW-F2_ch10	QTL	47 cM	55 cM	-
TM-1 x WT-936, F2 (2005).chr15.2	qL2W.TW-F2_ch15	QTL	0 cM	15 cM	-
TM-1 x WT-936, F2 (2005).chr15.1	qL1L2A.TW-F2_ch15	QTL	140 cM	150 cM	-
TM-1 x WT-936, F2 (2005).chr18.1	qLBN.TW-F2_ch18	QTL	2.6 cM	5 cM	-
TM-1 x WT-936, F2 (2005).chr20	qLBN.TW-F2_ch20	QTL	6.8 cM	27 cM	-

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TM-1 x WT-936, F2 (2005)