pAR0057, pAR0057 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0057
Genbank IDCA992686
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992686
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:53353739..53354643 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:89076058..89076966 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:92444004..92444912 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:4773586..4774487 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold56.1supercontigscaffold56.1:580045..580949 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:30126957..30127242 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:50510405..50511309 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:54609080..54609984 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:53841740..53842644 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:54149534..54150438 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:50621141..50622045 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold18672supercontigscaffold18672:33692..34600 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:88185741..88186649 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:90390288..90391196 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:92031803..92032711 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:94999709..95000617 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:90363027..90363935 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:54701744..54702648 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:95743670..95744578 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:97131927..97132835 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch07_At.07N/A34pAR057bView
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch07_At.07N/A4.84pAR057View
3Palmeri x K-101, F2 (2007)AD_ch07_At.07N/A37.4pAR057View
4Pima S-7 x im, F2 (2007)AD_ch07_At.07N/A0pAR0057View
5Pima S-7 x n2, F2 (2007)AD_ch07_At.07N/A0pAR0057View
6AD-genome wide Reference Map (2009)AD_ch07_At.07N/A12pAR0057View
7TM-1 x WT-936, F2 (2005)AD_ch07_At.07N/A0pAR0057View
8TM-1 x WT-936, F2 (2005)AD_ch16_Dt.07N/A26pAR0057View
9AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A166pAR0057View
Sequence
>pAR0057 ID=pAR0057; Name=pAR0057; organism=Gossypium hirsutum; type=genetic_marker; length=659bp
ATCAGATGATCACCAATTTTGTCACTGATGTGTTGAAACATAACATAGGA
AAGTAAGGCATTAATAAATGAGAGAAATAAAGAGAAAGATGATAGTATTG
TACACGTTGTTTTTGGTAGAAACAAGCTCAAAGCCAGATAGAGGGGGGAA
GACGATATATATATTAGCCATAGGATCATTGAAACCCAAAATTATTACAA
AATGAAACAGTGACTCATTTAACTTCTTCAATCTCATCCAATGCGTAGTT
GTTGGTAGATACATTGGCGTAATTAACTTTGTTGAATCGAACCACAACTG
GGTACCGAGTCTTGGGATCCTGGTCAACTGTAACAACTGATCCATAGCTG
TTGTACCAGTAGGACTCCCTCCTAAGAATCTTCACCTTGGTGCCTCTTTT
TGGTCCTATTGGTGGTGGCTTAGGCTTAGGGGCTTCACCCCCTTCAGGTG
GTGCAGTGGTGGTTGCTGGGGTTGGAGAGGGTGGTGGTGGTGAAGCCTCA
TCAGCTGCCCTCACAACAAGCCTTGAAGTGTTGTTGGTCTTGGATGGGAA
AAACACCATGTTGTTGTTGTTGGTCTTAGAAGTCCCTGCAGAAACATTGG
GTGTTAGCAAGAAACCTGAAGCAGCCGATGCCATGTTGCAGCAGCTAGCC
ATGTCTCCA