A1311, A1311 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1311
Genbank IDCA994066
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994066
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:34484492..34485553 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:33634065..33635123 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:34026498..34027559 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr1chromosomeDt_chr1:23531206..23532267 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:33672650..33673711 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:34669111..34670172 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:33464373..33465434 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:34668538..34669599 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:34026630..34027691 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:38041804..38042862 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4644supercontigscaffold4644:253673..254731 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:33678883..33679941 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:33562099..33563157 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:33996882..33997943 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:34351215..34352276 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:33917224..33918282 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:34976948..34978009 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:35697225..35698283 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:36389205..36390266 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1A1-97 x A2-47, F2 (1999)A_AA_lg04N/A24A1311View
2Gtr x Gra, F2 (2004)D.07N/A73.2A1311View
3Palmeri x K-101, F2 (2007)AD_ch16_Dt.07N/A58.1A1311View
4AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A105A1311View
5TM-1 x WT-936, F2 (2005)AD_ch16_Dt.07N/A68.1A1311View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch16_Dt.07N/A115.4A1311View
Sequence
>A1311 ID=A1311; Name=A1311; organism=Gossypium herbaceum; type=genetic_marker; length=1059bp
AGGGAGAACCATCAGAAGAACGCAACTGGTTTCTCTTTTCTGTTTTCCCC
CTCTCTCGTTCTCGCCAATTAATTTCGGAAATTTCCTTTTCTTTTGAAAA
CGATTGCTTCCTTTTTTTTTTCCCCTAAAATTTGATCTAAGCGATGAACT
TTTTTACTCGGGAAATTCCCCTATTTTATCATAAATGGTTAGCCAAATTG
CTCTTCATCTTTAAAATATCTTGATTGCTTTCTTCGAGGATTGATCTATT
TCTTCTTTTTCTTTCTGTTTTTGTAGATATGAGTTTCATCAAAGACATAA
TCGACTCTCTAAGCTCAATCATCTCAACCGATAGCACGCCATATGAATCA
ACGCAAAACCCTAGTTCTTCCACATGTCAGAACATGGAGGGAATAGCTGG
AAACGAACGCACCGCGTATAAGCTCAAAGGATACTTCGATTTGGCCAAAG
GAGAGATCGACAAAGCAGTTCGAGCGGAAGAATGGGGTTTAGTAGACGAC
GCCCTGATTCACTATAAAAATGCACAGCGAATTCTGATCGAGGCTAGCTC
CACTCCCACACCTTCATATATCGGCTCTAGGTATTTCAACAATTATCTTT
GCATTTTGCTTTTGCTAATTGCCTGATCATTTGGTGTTGATGGATTATAA
ATTTGACTCCTCATATTTTGTGATAGTGAACAAGAAAAGGTGAAATCGTA
TAGGCAAAAGATATCGAAATGGCAAGGTCAAGTATCTGAGAGACTACAGG
TTTTAAGTCGCCGATCAGGTTATTAGTAGTGTTCTGAATATTTATCATGT
TAAGTGATTTTACAATAATTGAAATACATACTCATTTCGTTTATTATTAT
TTTTCTATCTTCTTTAGGTAGCACATCCGCGAACAAGGTATGGCTTTCTC
AGTCTTATGTTAGTTAAATGTAAACTTAACCATGTTTATTAGATGGCAAC
TGCGTTATGCGGTTGTTAGTGAGATTGATTATTGTCTTACAGTGTTCCCA
TTCTTTTATTATATAATGTTATACATATGTGCAGAACACCTTAACTCATG
CACAAACTG