A1672, A1672 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1672
Genbank IDCK640437
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640437
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:22542139..22542899 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:22505903..22506663 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:21548770..21549530 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:21509412..21510172 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:101324761..101325513 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:101275100..101275852 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Ghir_A11chromosomeGhir_A11:22360271..22361031 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:21632371..21633131 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:21599091..21599851 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:22112685..22113445 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:22076459..22077219 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:22533827..22534587 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:22499558..22500318 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold11323supercontigscaffold11323:161948..162708 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:21394322..21395082 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:21354970..21355730 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:21542687..21543447 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:22060327..22061087 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:22025763..22026523 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:22124867..22125627 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:22082010..22082770 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:21862452..21863212 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:21823086..21823846 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:22719487..22720247 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:22683251..22684011 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:23130963..23131715 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:23089033..23089785 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:23007586..23008338 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:22957873..22958625 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
E11chromosomeE11:23692080..23692840 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr11chromosomeChr11:150028498..150029257 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch11_At.11N/A131.3A1672View
2Deltapine-61 x Seaberry, F2 (2000)AD_ch11_At.11N/A130.6A1672View
3Palmeri x K-101, F2 (2007)AD_ch11_At.11N/A102.1A1672View
4AD-genome wide Reference Map (2009)AD_ch11_At.11N/A222A1672View
5TM-1 x WT-936, F2 (2005)AD_ch11_At.11N/A0A1672View
Sequence
>A1672 ID=A1672; Name=A1672; organism=Gossypium herbaceum; type=genetic_marker; length=756bp
CTCAATAATTATTCGAAAACACTGCTTTTGGAGAAAGAATCAGGACCAAG
CTTATGGTGATGATGATGAACCAAAACTTGGATGGCATTGTCGGAGAGGA
TGGAGAGCATTAGGGAAAGAAACTGAGAGTAGTTGGATATAAAATGAGCG
TCTGAAAGTGAATTGGTGTTGATCTTCATGATCAAATAGTTGGTATTTGA
CTAATTCAAAGTTGAAAATTTTCTAAAGGAAACTTATGTTATATGCCACC
ATTAAGCGCCAGTCAATGGAAATTTAGGTAGCCTACCATGGCAATAATAT
ATTATTAAGTGTGAATAACCCAGTTCATTATAATACTGCTCTCAGGACTC
GAAACTCATAAAGGTATAAACTCAGTTCGAGTTGTTGAAAACTTGAAGAA
AGCTGTAACTGGAAAATATCATCTGATTTTAATGATTGAATAAATCAATA
ATAGTACTACTTTGGCTGAAAGTATTTCTAGGTCGAATCTATAAGCAACT
GGTAAGACCCTACGTTTTATCTCCTAGCTGATGCAGTTGTGATGGGAAAG
AGAACAAGCGACCATGGAATTTGAAGATGAACTGGTATTGACCAATCAAA
ATGGTTAGAGTTAATGAAGTCATTGGCTGCTTAGGGAGATTAGGATTCGA
TCTGAAGTAGCCAAGGTCAATTTGCTGCTATTGCTAATGAAGATTGAACA
TCAGAATGAGTCAAACCATGAAAGTTATTTAAGAGTTGAGATATTCAATG
AAACAG