G1124, G1124 (genetic_marker) Gossypium raimondii

Marker Overview
NameG1124
Genbank IDCA994229
TypeRFLP
SpeciesGossypium raimondii
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994229
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:70682086..70683355 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:66843578..66844847 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:74081..75353 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:46513..47772 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D02chromosomeD02:67261879..67263148 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:69742990..69744259 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:69719558..69720827 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:71079593..71080862 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:68195596..68196865 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt02chromosomeDt02:71290547..71291816 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15633supercontigscaffold15633:461079..462348 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:67605054..67606323 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:68824187..68825456 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:69838049..69839318 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:71527345..71528614 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:68377615..68378884 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:72162276..72163545 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:63000398..63001670 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:66043267..66044538 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_05chromosomeChr_05:43642000..43643259 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:67593773..67595042 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:44993716..44994985 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:37594967..37596233 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeG1124:1..1272 .
Chr05:64063734..64065006 +		n/a
Chr5chromosomeG1124:1..1272 .
Chr5:43031903..43033175 +		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Gtr x Gra, F2 (2004)D.03N/A102.4G1124View
2Palmeri x K-101, F2 (2007)AD_ch14_Dt.02N/A164.8G1124View
3AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A206G1124View
4SMA-4 x A1-97, F2 (2005)A_SA_lg13N/A50.3G1124View
5TM-1 x WT-936, F2 (2005)AD_ch11_At.11N/A14.5G1124View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch03_At.03N/A30.3G1124View
Sequence
>G1124 ID=G1124; Name=G1124; organism=Gossypium raimondii; type=genetic_marker; length=1272bp
GTCCATGCAGTTCAAAATTGATTTTCTTAGCTCCCCCATCTGACGCTGGA
GTTGCTCGATGTGTCCTCTTAAATACAAATCAGGTCGATTTCCTTTAATA
TGTAAACACATGCATCCACAGCAAATTAAAACCAATGAATGAATACCCTG
AACCTGACTCGGAAAATTTTTAATTAATAGAATGAATGAATACTCACCAA
GGAAGTAGGGGCTATCGAACAAGAGGACCGTCGAGTATCCTGATAATATT
GAGCTTCAGATACTCCAGATGGTGGTGAAAACGTAGATGGACCCCGATCA
GAATAATTACCAGTTTCTTTACCATCTTGAGAACTCCATGACCTCGTTAG
GTCCGATGGTGAAGGCATTTGGATAGATGATGAGGATTGATTGAAGTAGG
TATGGGCTTCATGCGATTGATGGCTGATTATGCTCATTTCTTCTTCTTCT
TCTTCTACTCCTAGATCACCAGCTGGATGCAAATGTCTCTGTAGGTAGGA
CTTCACTTGGACCATTCTATCCTCATCGACCGCCTCTTCTTGACTTGCAC
CTCCATCCTCTTGCATAATTTGTACCCGAGAGTTCATTAATCGGTCCATT
CTCTCTCGGAAATCACTTGCAAGACAAGTTGAAACTCTTCCCCTGCATTG
GTAGGTAATTAGGAAATTATGACGCTGGCCTTTTACGTCTTGCAAGATCA
TAAGAGAGATCAAACATCAACTTATATAACCTCATCTCATATTTTAAGGT
TATATGAGTGTGTATGTGAAATATTCCAACCTTTATGTAAATATGTACTA
GTAAATAATATACATACTATATTTGAGTGTATATCAAATTCAAAACAAAA
CGTATAAAAATAGTAAAAAGTGATGTACCTTTCTAGGAGCTGACGTATCT
CCTCATTTTTGGAGGTGGTGTTAAGCACTTCCTGGTACCATGCTTTTCGT
AAGTCTTCCCAATAACTTCTGGGTCGAGATATATCTCTAAACCAGTCATA
ATTTGTTTGATCAAAATATTGTGGGTAATGATCTTCTAGCTCTTCGGTTA
CCTCACTACCATCATTGTCACTGTAGAATGTTGCCTTCCCTGCATTTTCC
TGAGAGTCAAGGTGGAGCTGCTGCTTGTCATCGATATCCTGTTCCAGTTC
CTGTTCTTCACCTATCTCATTCAAGGATGTTTCTGTAGTTTCTTCTAAGC
CAAGAGAGAGATGCTGCTGGTGATTATCTCGTTCTTCCGCAGTTTCATTT
TGAGAGTAGGGATTCACGTTTT