|
|
Marker Overview
| Name | NAU5163 |
|---|
| Genbank ID | DT564791 |
|---|
| Type | SSR |
|---|
| Species | Gossypium hirsutum |
|---|
| Germplasm | TM-1
TM-1
|
|---|
| Source Sequence | DT564791.1
|
|---|
| Source Type | EST |
|---|
| Repeat Motif | (gaagag)4 |
|---|
| PCR Condition | Annealing temperature: 57 |
|---|
| Primer 1 | NAU5163_F: GACTCCCACCCTAACAACAG |
|---|
| Primer 2 | NAU5163_R: TTTTGCAAGAATCCTTCTCC |
|---|
| Restriction Enzyme | EcoRI; NotI |
|---|
| Publication | [view all] |
|---|
| Contact | Zhang, Tian-Zhen
|
|---|
| Comment | Primer data obtained in 2007-05 |
|---|
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
| Year | Publication |
|---|
| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Germplasm
| Stock Name | Type |
|---|
| TM-1 | accession |
| TM-1 | accession |
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch01_At.01 | N/A | 80.67 | NAU5163 | View |
| 2 | AD-genome wide Reference Map (2009) | AD_ch01_At.01 | N/A | 24 | NAU5163 | View |
| 3 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch01_At.01 | N/A | 63.3 | NAU5163 | View |
| 4 | Yumian-1 x T586, RIL (2015) | AD_ch01_At.01 | N/A | 66.1 | NAU5163 | View |
| 5 | DH962 X Ji Mian 5, F2 (2015) | AD_ch01_At.01 | N/A | 107.32 | NAU5163 | View |
| 6 | DH962 X Ji Mian 5, F2 (2015) | AD_ch15_Dt.01 | N/A | 107.32 | NAU5163 | View |
| 7 | W10 x TM-1, F2:3 (2015) | AD_ch01_At.01 | N/A | 37 | NAU5163 | View |
| 8 | DH962 x Ji Mian 5, RIL (2015) | AD_ch01_At.01 | N/A | 27.8 | NAU5163 | View |
| 9 | DH962 x Ji Mian 5, RIL (2015) | AD_ch15_Dt.01 | N/A | 27.8 | NAU5163 | View |
| 10 | SG 747 x Giza 75, BIL (2013) | AD_ch01_At.01 | N/A | 53.5 | NAU5163 | View |
| 11 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch01_At.01 | N/A | 104.5 | NAU5163 | View |
| 12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch01_At.01 | N/A | 81.52 | NAU5163-200 | View |
| 13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch01_At.01 | N/A | 78.3 | NAU5163-200 | View |
| 14 | TM-1 x Hai-7124, BC1 (2012) | AD_ch01_At.01 | N/A | 53.3 | NAU5163-200 | View |
| 15 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch01_At.01 | N/A | 50.88 | NAU5163 | View |
Sequence
>NAU5163 ID=NAU5163; Name=NAU5163; organism=Gossypium hirsutum; type=genetic_marker; length=216bp
GACTCCCACCCTAACAACAGCGCTATCTCTGACTTTGACAGTGCCCAATT
CTCCATCCCCGATGCCCTCAGAACTACCCCTCAACAACCTACCTGGGATG
TCCACCATAGGCAACGAGTTGAGCGGATATTCTCCAACGGCGATCTCCGC
CACAGAAAAGTTAAAGAAGAGGAAGAGGAAGAGGAAGAGGAGAGCAGGAG
AAGGATTCTTGCAAAA
|
