Gossypium raimondii

Overview
Species Name raimondii
Family Malvaceae
Scientific Name Gossypium raimondii Ulbr.
Synonym N/A
Common Name 雷蒙德氏棉 [view all 2]
GRIN Taxonomy GRIN
Geographic Origin Peru
Genome Group D
Genome D5
Haploid Chromosome Number 13
Ploidy diploid
Propagation Method N/A
Fertile withGossypium thurberi [view all 3]
Sterile withGossypium anomalum [view all 7]
Incompatible withN/A
GermplasmN/A
Library[view all 7]
Sequence [view all 5643462 ]
Publication Wang K, Wendel JF, Hua J. Designations for individual genomes and chromosomes in Gossypium. Journal of Cotton Research. 2018 JUN 29;1:3
Description

An important reservoir of beneficial genes for elite fiber quality, resistance to verticillium wilt, insect resistance, and tolerance to drought and salt. Additionally, it is also a source of fertility restorer for cytoplasmic male sterility (Xu Z, et al. 2025).
Alias
Common Name
Peruvian cotton
雷蒙德氏棉
Relationships
Germplasm
NameType
D5-1accession
D5-10accession
D5-11accession
D5-12accession
D5-13accession
D5-14accession
D5-15accession
D5-16accession
D5-17accession
D5-18accession
D5-19accession
D5-2accession
D5-20accession
D5-21accession
D5-22accession
D5-23accession
D5-24accession
D5-25accession
D5-26accession
D5-27accession

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Libraries
The following libraries are associated with this organism.
Library NameType
Pst1-G fragmentcDNA
GR__EacDNA
GR__EbcDNA
Gossypium raimondii DNAgenomic
Gossypium raimondii WGS librarygenomic
rGB-SNP_Grgenomic
grgenomic
Image
File NameLegend
121_Graimondii_leaves.jpgG. raimondii - leaves
162_sp_draw_raimondii.jpgG. raimondii - illustration
39_FISH_AJB-85-1364.jpgFISH photomicrographs of Gossypium hirsutum repetitive elements hybridized to metaphase chromosomes of G. hirsutum, G. arboreum, G. raimondii, and an A2D5 synthetic diploid. [Image from Hanson et al., 1998, AJB-85-1364]
Genomes
 Date   Assembly Home Page  Reference  Contact  Germplasm  Link to*
2024-10 Grai (D5) 'D5-3' Telomere-to-Telomere genome PKU_v1.0 Huang 2024 Zhu, Yu-Xian D5-3 Jbrowse
2023-02 Grai (D5) 'GPD5lz' genome HAU_v1 Wang 2022 Zhang, Xian-Long GPD5lz Jbrowse
2021-08 Grai (D5) 'Grai D502' genome HAU_v1 Wang 2021 Zhang, Xian-Long Grai D502 JBrowse
2021-02 Grai (D5) 'D5-8' genome ISU_v1 Grover 2019 Grover, Corrinne E. D5-8 JBrowse
2019-07 Grai (D5) 'D5-4' genome NSF_v1 Udall 2019 Udall, Joshua A. D5-4 JBrowse
2012-12 Grai (D5) genome JGI_v2_a2.1 Paterson 2012 Paterson, Andrew H. D5-? Jbrowse**
2012-08 Grai (D5) 'D5-3' genome BGI-CGP-draft_v1 Wang 2012 Yu, Shu-Xun D5-3 Jbrowse

* All JBrowse feature alignments include CottonGen markers and Transcripts. 
** Genome(s) has extra/special alignments
- the D5-JGI JBrowse contains extra alignments of: Diploid and tetraploid SNP reads [BAM] 

Transcripts

Below is a list of transcript assemblies that are available for Gossypium raimondii. Click the assembly name for further details.

 
Assembly  Name Analysis Name Date Constructed Stats

 

Gossypium raimondii CottonGen RefTrans V1

 

G. raimondii CottonGen RefTrans V1

 

 

2016-11-09

 Reads: 545 million
Contigs:31,990

 

Gossypium raimondii unigene V1.0

 

 

 

G. raimondii unigene V1

 

2012-09-27

 Reads: 442,954
Contigs:21,698
Singlets:128,218