GBrowse_syn

Conserved syntenic regions between cotton genomes were analyzed by CottonGen using i-ADHoRe v3.0 (Proost et al. 2012) with default settings and the level 2 option. Gene homologs, identified using OrthoMCL program (Li et al. 2003), were used as an input for i-ADHoRe v3.0.