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Marker Overview
Name | CGR5001 |
Genbank ID | GQ393183 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 33 B |
Source Type | genomic |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CGR5001_F: TCTCCATGTATCCACCCACA |
Primer 2 | CGR5001_R: ATAGCGAATGCAGATCGTGA |
Publication | [view all] |
Contact | Monsanto
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Comment | Primer data obtained in 2009-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Feature Name | Type | Location | Analysis | Reference |
A07 | chromosome | A07:4686913..4687077 . | Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1 | Wang F, Zhang J, Chen Y, Zhang C, Gong J, Song Z, Zhou J, Wang J, Zhao C, Jiao M, Liu A, Du Z, Yuan Y, Fan S, Zhang J. Identification of candidate genes for key fibre‐related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions. Plant biotechnology journal. 2020; 18(3):707-720. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | W10 x TM-1, F2:3 (2015) | AD_ch07_At.07 | N/A | 0 | CGR5001 | View |
2 | GX1135 x GX100-2, RIL (2016) | AD_ch07_At.07 | N/A | 43.4 | CGR5001 | View |
3 | 0-153 x sGK9708, RIL (2016) | AD_ch07_At.07 | N/A | 20.4 | CGR5001 | View |
4 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch07_At.07 | N/A | 6.6 | CGR5001 | View |
5 | Monsanto SSR Bin Map, (2009) | AD_ch07_At.07 | N/A | 81 | CGR5001 | View |
6 | LMY22 x LY343, RIL (2020) | A07 | N/A | 115.18 | CGR5001 | View |
7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch07_At.07 | N/A | 100.95 | MON_CGR5001 | View |
8 | DH962 x Ji Mian 5, RIL (2015) | AD_ch01_At.01 | N/A | 71.3 | MON_CGR5001 | View |
9 | DH962 x Ji Mian 5, RIL (2015) | AD_ch15_Dt.01 | N/A | 71.3 | MON_CGR5001 | View |
10 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch07_At.07 | N/A | 117.6 | CGR5001 | View |
11 | MGG-293-793, MAGIC (2018) | AD_ch07_At.07 | N/A | 22.1 | CGR5001b | View |
12 | MGG-293-793, MAGIC (2018) | AD_ch16_Dt.07 | N/A | 39.7 | CGR5001a | View |
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