HAU1721, HAU1721 (genetic_marker) gossypium spp

Marker Overview
NameHAU1721
Genbank IDDR461014
TypeSSR
SpeciesGossypium spp.
Source SequenceDR461014
Source TypeEST
Repeat Motif(AT)9
PCR ConditionAnnealing temperature: 55.8
Primer 1HAU1721_F: AAGATTCCGAAGCTCAAATG
Primer 2HAU1721_R: ACACTTCACACCCTACATAACTT
Product Length242
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR461014
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:348259..348500 -
A01chromosomeA01:423135..423370 -
CM018215.1chromosomeCM018215.1:322480..322731 -
CM018202.1chromosomeCM018202.1:267681..267912 -
D5_01chromosomeD5_01:385571..385820 -
D10_01chromosomeD10_01:60072010..60072267 +
scaffold5581.1supercontigscaffold5581.1:12048..12283 -
scaffold280.1supercontigscaffold280.1:332272..332513 -
D01chromosomeD01:317624..317865 -
A01chromosomeA01:366235..366470 -
Ghir_D01chromosomeGhir_D01:365695..365934 -
D01chromosomeD01:358955..359196 -
A01chromosomeA01:371123..371362 -
D01chromosomeD01:330665..330906 -
A01chromosomeA01:418387..418622 -
D01chromosomeD01:346695..346936 -
A01chromosomeA01:414551..414786 -
Dt01chromosomeDt01:477392..477643 -
scaffold11669supercontigscaffold11669:183116..183347 +
scaffold11669supercontigscaffold11669:179746..179977 +
scaffold13861supercontigscaffold13861:352134..352385 -
Gbar_D01chromosomeGbar_D01:364581..364830 -
Gbar_A01chromosomeGbar_A01:242216..242447 -
D01chromosomeD01:352872..353113 -
A01chromosomeA01:335839..336070 -
CM017623.1chromosomeCM017623.1:353643..353884 -
CM017610.1chromosomeCM017610.1:370809..371042 -
CM017649.1chromosomeCM017649.1:361031..361268 -
CM017701.1chromosomeCM017701.1:365835..366082 -
CM017688.1chromosomeCM017688.1:370579..370810 -
D01chromosomeD01:322378..322619 -
A01chromosomeA01:416540..416775 -
Chr01chromosomeChr01:281315..281558 -
Chr01chromosomeChr01:364688..364937 -
B_01chromosomeB_01:359108..359365 -
Chr_02chromosomeChr_02:340198..340511 -
Chr02chromosomeChr02:580521..580760 -
E01chromosomeE01:411039..411288 -
Chr02chromosomeHAU1721:1..546 .
Chr02:368838..370111 -
Chr8chromosomeHAU1721:1..546 .
Chr8:22146006..22147279 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR461014DR461014Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A11.07HAU1721View
2Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A1.3HAU1721View
3DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A129.41HAU1721View
4DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A129.41HAU1721View
5DH962 x Ji Mian 5, RIL (2015)AD_ch11_At.11N/A56.7HAU1721View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A161.5HAU1721View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch15_Dt.01N/A35.9HAU1721View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A0HAU1721View
9LMY22 x LY343, RIL (2016)chr.15N/A15.7HAU1721View
10LMY22 x LY343, RIL (2020)D01N/A139.32HAU1721View
Sequence
>HAU1721 ID=HAU1721; Name=HAU1721; organism=Gossypium spp.; type=genetic_marker; length=242bp
AAGATTCCGAAGCTCAAATGAAGAAGAAAAAATGGTGGACTTGCATGGAT
CTCACCCTTATATGTGTGTGTGTGTGTGTGGCAGTAATTGTAGTACTTAA
GAATAGCCATAAATGTATTTAGGAAGAGGAAGAAGAGCTTAATGGGTGAT
CATTGTTTCCTCTTTTGTTATAGTATTTAATTGAGGAAGGAATGTTATTG
TAATATATATATATATATAAAGTTATGTAGGGTGTGAAGTGT