TMB1748, TMB1748 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB1748
AliasTMH C2-G24
Genbank IDBV679662
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679662.1
Source Typegenomic
Repeat Motif(CA)11
PCR ConditionAnnealing temperature: 55
Primer 1TMB1748_F: CAAGGTCGTCGAATTTAGCC
Primer 2TMB1748_R: AACGTTTTCCATGCCCTCTA
Product Length246
PolymorphismP_ TMB1748
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679662
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:6644807..6645052 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:6625554..6625800 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:105634728..105634968 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016615.1chromosomeCM016615.1:101672360..101672594 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:4339389..4339634 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:5600073..5600318 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:7440210..7440455 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:7017701..7017946 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:7389643..7389888 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:6805277..6805522 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4553supercontigscaffold4553:509270..509502 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold36006supercontigscaffold36006:45118..45364 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:6500046..6500292 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:44794203..44794435 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:6775425..6775666 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:6993363..6993604 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:7446404..7446649 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:6926778..6927027 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:7484219..7484464 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:6530119..6530360 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:111569845..111570085 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F02chromosomeF02:69871269..69871500 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679662.1BV679662.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A85.15TMB1748View
2Yumian-1 x T586, RIL (2006)AD_ch03_At.03N/A71.8TMB1748View
3Yumian-1 x T586, RIL (2015)AD_ch03_At.03N/A82.8TMB1748View
4TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A31.2TMB1748View
50-153 x sGK9708, RIL (2016)AD_ch03_At.03N/A42.4TMB1748View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A146.7TMB1748View
70-153 x sGK9708, RIL (2017)AD_ch03_At.03N/A70.24TMB1748View
8LMY22 x LY343, RIL (2016)chr.3N/A84.4TMB1748View
9LMY22 x LY343, RIL (2020)A03N/A118.94TMB1748View
10Yumian-1 x T586, RIL (2009)AD_chUN/A0TMB1748/280yView
11TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A31.22TMB1748View
Sequence
>TMB1748 ID=TMB1748; Name=TMB1748; organism=Gossypium hirsutum; type=genetic_marker; length=246bp
CAAGGTCGTCGAATTTAGCCATACAAAAATTGAAAATTGCCAAAGTCTTC
TAAGCACTCGAAAACCTCACAAGATGAAATATTTTCAAAAATTTGTTTTT
GGTGCTGAAAGACCTTTAAATTAGTATTTATAATGGTGGTTCCCCATAAA
AAACCATCAATCCCACTATCACACACACACACACACACACATAATACCAC
ATAAACAAAGTAGTGGGCAACAAAAGTAGAGGGCATGGAAAACGTT