TMB0180, TMB0180 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0180
AliasTMB09
Genbank IDBV679307
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679307.1
Source Typegenomic
Repeat Motif(CA(9
PCR ConditionAnnealing temperature: 55
Primer 1TMB0180_F: CAACCATCACACCCAACAAA
Primer 2TMB0180_R: AAAATGGAATGTTCCAGTCACC
Product Length200
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679307
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018208.1chromosomeCM018208.1:67583369..67583566 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
tig00006301_CRI-A2_v1.0.a1chromosometig00006301_CRI-A2_v1.0.a1:101800..102007 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr3chromosomeAt_chr3:52433208..52433407 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A07chromosomeA07:51903558..51903757 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D07chromosomeGhir_D07:36266183..36266368 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A07chromosomeGhir_A07:69797176..69797375 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A07chromosomeA07:69432041..69432240 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A07chromosomeA07:70347253..70347452 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A07chromosomeA07:68069110..68069309 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt07chromosomeDt07:39449176..39449354 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
At07chromosomeAt07:57407153..57407350 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold6010supercontigscaffold6010:92952..93149 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold10319supercontigscaffold10319:421829..422007 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D07chromosomeGbar_D07:35917545..35917723 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A07chromosomeGbar_A07:67237544..67237741 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A07chromosomeA07:68762526..68762723 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017616.1chromosomeCM017616.1:70153798..70153995 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017642.1chromosomeCM017642.1:72303327..72303528 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017694.1chromosomeCM017694.1:68444385..68444582 +Gossypium darwinii (AD5) genome HGS_v1.1
A07chromosomeA07:71335432..71335631 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr07chromosomeChr07:64829898..64830111 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr07chromosomeChr07:66784072..66784279 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr_01chromosomeChr_01:25001125..25001395 +Gossypium harknessii (D2-2) genome ISU_v1
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679307.1BV679307.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch15_Dt.01N/A76.4TMB09View
2Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A39.21TMB0180View
3AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A103TMB0180View
4AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A136TMB0180View
5Handan-208 x Pima-90, F2:3 (2007)AD_ch16_Dt.07N/A109.6TMHB09View
6Xinluzao-1 x Hai-7124, F2 (2008)AD_ch16_Dt.07N/A132TMHB09View
7TM-1 x 3-79, RIL (2012)AD_ch07_At.07N/A87.53TMB0180bView
8TM-1 x 3-79, RIL (2014)AD_ch07_At.07N/A50.1TMB0180bView
9TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A84.37TMB0180aView
10TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A40.1TMB0180aView
11TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A81TMB09-170View
12TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A80.8TMB09-170View
13H16 x T586, F2 (2009)AD_ch16_Dt.07N/A80.9TMB09-170View
14TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A50.5TMB09-170View
15TM-1 x 3-79, RIL (2012.v3)AD_ch07_At.07N/A50.06TMB0180bView
16TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A40.08TMB0180aView
Sequence
>TMB0180 ID=TMB0180; Name=TMB0180; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
CAACCATCACACCCAACAAACATGCTTTAAACACTTAATCTTGAACACGA
AATCCTAAATTATGCATTGCCTAGCACAATTGAGAAATTTAAAAACAAGA
GTAGAATCGTCCCTTTAAACATCACTAGCCAAAAAAAAAAACACACACAC
ACACACACAAATCATAAAATTAATAATAGGTGACTGGAACATTCCATTTT