MGHES0062, MGHES0062 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMGHES0062
AliasMGHES62
MGHES-62
MGHES-062
Genbank IDAF336280
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceAF336280.1
Source TypeEST
Repeat Motif(CA)10; (AG)4
PCR ConditionAnnealing temperature: 55
Primer 1MGHES62_F: TGCATCTGATCTAATTGTTGGTG
Primer 2MGHES62_R: TGTTCCTCACAGCAAGAGCA
Product Length142
Publication[view all]
CommentGHDEL65; Primer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF336280
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:61328660..61328803 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:115164305..115164440 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:57713235..57713390 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:110491316..110491451 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:53965032..53965189 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:33990945..33991080 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:120053418..120053553 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:7191802..7191937 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:11585565..11585702 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1637.1supercontigscaffold1637.1:336193..336336 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:93582425..93582560 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:57987807..57987950 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:95725389..95725524 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:60563256..60563399 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:113737175..113737310 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:61137703..61137846 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:116606832..116606967 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:60403813..60403956 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:116554169..116554304 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:57690281..57690426 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:112512297..112512432 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:60339470..60339623 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At08chromosomeAt08:99996324..99996459 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At08chromosomeAt08:99993819..99993954 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9613supercontigscaffold9613:64907..65042 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9613supercontigscaffold9613:62402..62537 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10027supercontigscaffold10027:70534..70687 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:57759501..57759654 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:111185382..111185517 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:59661516..59661671 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:112244353..112244488 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:59277217..59277362 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:110663085..110663220 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:61488553..61488720 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:120118022..120118157 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:111287260..111287395 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:61131586..61131729 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:118467280..118467415 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:122738127..122738262 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:123702656..123702791 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:54850865..54851022 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:95173174..95173311 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:56258427..56258566 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:42333262..42333405 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:38876693..38876836 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:58683082..58683225 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:37048196..37048343 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:31194508..31194647 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:37675737..37675959 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:111997071..111997208 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:96761571..96761708 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:14888036..14888175 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Publications
YearPublication
2004EST-SSR: A new class of genetic markers in cotton.
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF336280.1AF336280.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A67.25MGHES062View
2TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A72.7MGHES062View
3Yumian-1 x T586, RIL (2015)AD_ch24_Dt.08N/A101.5MGHES62View
4Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A9MGHES62View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch24_Dt.08N/A10.6MGHES62View
6W10 x TM-1, F2:3 (2015)AD_ch24_Dt.08N/A45.6MGHES-62View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch24_Dt.08N/A83.16MGHES62View
8TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A73.29MGHES062View
Sequence
>MGHES0062 ID=MGHES0062; Name=MGHES0062; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
TGCATCTGATCTAATTGTTGGTGGACACACACACACACACACACATACAT
GTAGCTTTTAGCTTTGAAATGTCTACTGGAGTTCAACATCAAGAGAGAGT
ACCAATGAACCTGAAGAAACAACTTGCTCTTGCTGTGAGGAACA