HAU1063, HAU1063 (genetic_marker) gossypium spp

Marker Overview
NameHAU1063
AliasTA25114_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TGA)5
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU1063_F: CCCGAAGAAGGTAAACAAGA
Primer 2HAU1063_R: ATCAGCGGAATTATCAGGAG
Product Length244
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:108239217..108239638 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:106397850..106398271 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4101015..4101436 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A10chromosomeA10:97365436..97365857 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:111209967..111210388 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:111676518..111676939 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111319047..111319468 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
scaffold17961supercontigscaffold17961:193057..193478 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:106675297..106675718 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:108060184..108060605 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:107362654..107363075 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:115077565..115077986 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:109673410..109673831 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:114494842..114495263 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124238440..124238861 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120158540..120158961 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A130HAU1063View
2Yumian-1 x 7235, RIL (2015)AD_ch20_Dt.10N/A157HAU1063View
3W10 x TM-1, F2:3 (2015)AD_ch20_Dt.10N/A61.9HAU1063View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A31.9HAU1063View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A42HAU1063View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A113.72HAU1063View
Sequence
>HAU1063 ID=HAU1063; Name=HAU1063; organism=Gossypium spp.; type=genetic_marker; length=244bp
CCCGAAGAAGGTAAACAAGAAAGATGACCCACAAGTACCCGAAGCCTCAG
AAATTTCGTCTACGACAGCAATGGAAGCAGAAAATGTTCCTGCTGTTGTT
AAACCCAAAGGCCGGGCCGGTGCAAAGAAGAAGACAAAGAAGGATGATAG
TGATGATGATGATGACAACGACTTTGATATTCCTGATCTAAGGGAGCGAC
TTGCCAAGCATAACATCGATTCCTCTCCTGATAATTCCGCTGAT