HAU0871, HAU0871 (genetic_marker) gossypium spp

Marker Overview
NameHAU0871
AliasTA20158_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CT)8+(AC)9
PCR ConditionAnnealing temperature: 57.2
Primer 1HAU0871_F: GGAGTTTGGGAAACCCTATC
Primer 2HAU0871_R: ACTTGAAGCAGATGCAAACA
Product Length184
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:13183210..13183392 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:11443419..11443589 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:12904197..12904389 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:12877739..12877931 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:45318261..45318443 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:11483846..11484028 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:13130574..13130756 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:12706184..12706366 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:13159243..13159425 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:11619241..11619410 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:13394866..13395048 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9662supercontigscaffold9662:266962..267156 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9662supercontigscaffold9662:264010..264180 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18167supercontigscaffold18167:217713..217903 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:12503405..12503595 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:11826654..11826824 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:13068806..13068998 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:12915969..12916175 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:13176216..13176393 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:12805730..12805920 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:13400690..13400872 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:13706515..13706698 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:12728856..12729051 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:183444876..183445048 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A35.4HAU0871View
2Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A18.3HAU0871View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A73HAU0871View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A148.1HAU0871View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A68.7HAU0871View
6W10 x TM-1, F2:3 (2015)AD_ch05_At.05N/A96.3HAU871View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A81.1HAU0871View
Sequence
>HAU0871 ID=HAU0871; Name=HAU0871; organism=Gossypium spp.; type=genetic_marker; length=184bp
GGAGTTTGGGAAACCCTATCTCTCTCTAAATATCAACCGAAAAAAGCTCA
AAAAACTACCCTTTCTTCCCCTCTCTCTCTCTCTCTCACACACACGCACA
CACACTTCCTCTCATTCTCTTTCTTTCCAACCTTTCTACACTCCTTTTTC
CCCATCGCTCCTACTGTTTGCATCTGCTTCAAGT