DPL0346, DPL0346 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0346
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0346_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0346_F: AGTGAACAGGGCGGAAATATAAAG
Primer 2DPL0346_R: CTATTACTTGTCCATTCCTCTGCC
PolymorphismP_ DPL0346
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D01chromosomeD01:62385155..62385379 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A01chromosomeA01:101839124..101839347 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1chromosomeCM018215.1:60839513..60839725 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_01chromosomeD5_01:54740287..54740496 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:97368737..97368951 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_01chromosomeD10_01:1813658..1813876 -Gossypium turneri (D10) genome NSF_v1_a2
CM016614.1chromosomeCM016614.1:134965313..134965522 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr9chromosomeDt_chr9:51146518..51146742 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D01chromosomeD01:59511772..59511996 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A01chromosomeA01:97875768..97875991 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:61230904..61231128 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A01chromosomeGhir_A01:115555073..115555290 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:62707294..62707518 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:116020663..116020886 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:62667427..62667651 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:113859746..113859969 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:59440661..59440885 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A01chromosomeA01:110651403..110651623 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt01chromosomeDt01:60849446..60849658 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold11279supercontigscaffold11279:33317..33529 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D01chromosomeGbar_D01:61088391..61088603 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:61729872..61730084 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017623.1chromosomeCM017623.1:62043193..62043411 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017610.1chromosomeCM017610.1:112065743..112065951 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017649.1chromosomeCM017649.1:63512561..63512779 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017636.1chromosomeCM017636.1:119610636..119610856 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:61503378..61503590 +Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:63130917..63131141 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A01chromosomeA01:117508340..117508563 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr02chromosomeChr02:2071935..2072149 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr01chromosomeChr01:50546859..50547068 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_01chromosomeB_01:96049355..96049567 +Gossypium anomalum (B1) genome NSF_v1
Chr02chromosomeChr02:59451131..59451340 +Gossypium thurberi (D1-5) genome CRI_v1
chr02chromosomechr02:45661423..45661632 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_02chromosomeChr_02:40415662..40415874 +Gossypium harknessii (D2-2) genome ISU_v1
Chr02chromosomeChr02:44091107..44091693 +Gossypium aridum (D4) genome ISU_v1
Chr02chromosomeChr02:42572964..42573173 +Gossypium lobatum (D7) genome ISU_v1
E01chromosomeE01:114561211..114561452 +Gossypium stocksii (E1) genome NSF_v1
F01chromosomeF01:96580696..96580908 +Gossypium longicalyx (F1) genome NSF_v1
Chr01chromosomeChr01:2303350..2303568 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr02chromosomeDPL0346:1..516 .
Chr02:60892901..60893401 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0346_origDPL0346_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A77.2DPL0346View
2Yumian-1 x 7235, RIL (2015)AD_ch01_At.01N/A9.4DPL0346View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A40.2DPL0346View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A43.1DPL0346View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A63.3DPL0346View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A117.4MON_DPL0346View
7W10 x TM-1, F2:3 (2015)AD_ch01_At.01N/A0MON-DPL0346View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A79.58DPL0346View
Sequence
>DPL0346 ID=DPL0346; Name=DPL0346; organism=Gossypium hirsutum; type=genetic_marker; length=225bp
AGTGAACAGGGCGGAAATATAAAGGCCGGGGAGGCTCCTTATGACGTGGG
GATTTTGGGTGGGATGGGTTTTTGGAGTAAACTATTCTTCTTCTTCTTCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTCTTACATTTATCGCTGCTAAAAT
GTAAACCTTTATTGTGTAAGGTGTGAGGGAAGGAGGTAAGCTAAATAAAA
GGGCAGAGGAATGGACAAGTAATAG