DPL0346, DPL0346 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0346
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0346_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0346_F: AGTGAACAGGGCGGAAATATAAAG
Primer 2DPL0346_R: CTATTACTTGTCCATTCCTCTGCC
PolymorphismP_ DPL0346
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:62385155..62385379 +
A01chromosomeA01:101839124..101839347 +
CM018215.1chromosomeCM018215.1:60839513..60839725 +
D5_01chromosomeD5_01:54740287..54740496 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:97368737..97368951 +
D10_01chromosomeD10_01:1813658..1813876 -
CM016614.1chromosomeCM016614.1:134965313..134965522 +
Dt_chr9chromosomeDt_chr9:51146518..51146742 -
D01chromosomeD01:59511772..59511996 +
A01chromosomeA01:97875768..97875991 +
Ghir_D01chromosomeGhir_D01:61230904..61231128 +
Ghir_A01chromosomeGhir_A01:115555073..115555290 +
D01chromosomeD01:62707294..62707518 +
A01chromosomeA01:116020663..116020886 +
D01chromosomeD01:62667427..62667651 +
A01chromosomeA01:113859746..113859969 +
D01chromosomeD01:59440661..59440885 +
A01chromosomeA01:110651403..110651623 +
Dt01chromosomeDt01:60849446..60849658 +
scaffold11279supercontigscaffold11279:33317..33529 +
Gbar_D01chromosomeGbar_D01:61088391..61088603 +
D01chromosomeD01:61729872..61730084 +
CM017623.1chromosomeCM017623.1:62043193..62043411 +
CM017610.1chromosomeCM017610.1:112065743..112065951 +
CM017649.1chromosomeCM017649.1:63512561..63512779 +
CM017636.1chromosomeCM017636.1:119610636..119610856 +
CM017701.1chromosomeCM017701.1:61503378..61503590 +
D01chromosomeD01:63130917..63131141 +
A01chromosomeA01:117508340..117508563 +
Chr02chromosomeChr02:2071935..2072149 -
Chr01chromosomeChr01:50546859..50547068 +
B_01chromosomeB_01:96049355..96049567 +
Chr02chromosomeChr02:59451131..59451340 +
chr02chromosomechr02:45661423..45661632 +
Chr_02chromosomeChr_02:40415662..40415874 +
Chr02chromosomeChr02:44091107..44091693 +
Chr02chromosomeChr02:42572964..42573173 +
E01chromosomeE01:114561211..114561452 +
F01chromosomeF01:96580696..96580908 +
Chr01chromosomeChr01:2303350..2303568 -
Chr02chromosomeDPL0346:1..516 .
Chr02:60892901..60893401 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0346_origDPL0346_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A77.2DPL0346View
2Yumian-1 x 7235, RIL (2015)AD_ch01_At.01N/A9.4DPL0346View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A40.2DPL0346View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A43.1DPL0346View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A63.3DPL0346View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A117.4MON_DPL0346View
7W10 x TM-1, F2:3 (2015)AD_ch01_At.01N/A0MON-DPL0346View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A79.58DPL0346View
Sequence
>DPL0346 ID=DPL0346; Name=DPL0346; organism=Gossypium hirsutum; type=genetic_marker; length=225bp
AGTGAACAGGGCGGAAATATAAAGGCCGGGGAGGCTCCTTATGACGTGGG
GATTTTGGGTGGGATGGGTTTTTGGAGTAAACTATTCTTCTTCTTCTTCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTCTTACATTTATCGCTGCTAAAAT
GTAAACCTTTATTGTGTAAGGTGTGAGGGAAGGAGGTAAGCTAAATAAAA
GGGCAGAGGAATGGACAAGTAATAG