DPL0052, DPL0052 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0052
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0052_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0052_F: GCTTACGTGTATGATTAAATCGCC
Primer 2DPL0052_R: CAGAGGACTTGTAAACAACACTGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:21115585..21115830 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:19339006..19339269 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:21462260..21462568 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:28874195..28874448 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Scaffold1210supercontigScaffold1210:405717..405960 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:19732588..19732833 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:20231727..20231976 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:18555453..18555696 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:19486254..19486513 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:19307693..19307958 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:20835215..20835460 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:19921879..19922119 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:19518265..19518512 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:20368609..20368854 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:20499952..20500216 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:21731657..21731965 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:21700408..21700654 -Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0052_origDPL0052_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A88.9DPL0052bView
2Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A101DPL0052bView
3TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A62.6DPL0052aView
4Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A61DPL0052aView
5Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A44.9DPL0052View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A56.6DPL0052View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A93.4DPL0052View
8DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A58.83MON_DPL0052View
9DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A58.83MON_DPL0052View
10DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A44.7MON_DPL0052View
11DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A44.7MON_DPL0052View
12W10 x TM-1, F2:3 (2015)AD_ch01_At.01N/A51.6MON-DPL0052View
13TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A88.95DPL0052bView
14TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A62.61DPL0052aView
Sequence
>DPL0052 ID=DPL0052; Name=DPL0052; organism=Gossypium hirsutum; type=genetic_marker; length=242bp
GCTTACGTGTATGATTAAATCGCCGGATTGGGATTCCGAATTTGCCAAAG
CCAAAGCCAGCCATAGCCCGAGCGCGAGGGGCCACCGATCTCATCTTCAA
CTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACA
CATACACATATTCGTTAGCGCCTCTCTTAAAACCTTTAATATTTCTTGAT
GCTATTTTAAAGTTGATTGCAGTGTTGTTTACAAGTCCTCTG