DC40103, DC40103 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40103
Genbank IDGQ394609
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1632
Source Typegenomic
Primer 1DC40103_F: ATAAACCCGAAGGAACCA
Primer 2DC40103_R: AACCTCTACCCGCCTAGT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394609
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:5950189..5950320 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:5596702..5596811 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr11chromosomeDt_chr11:60208824..60208957 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:5521021..5521154 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:6099147..6099278 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:6269215..6269316 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:5734972..5735105 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:5910178..5910307 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:5990103..5990226 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold14174supercontigscaffold14174:77654..77763 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10424supercontigscaffold10424:357831..357932 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10424supercontigscaffold10424:355198..355299 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:5699071..5699180 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:6444749..6444850 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:5769870..5769979 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:5698410..5698529 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:5893258..5893389 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:5815579..5815722 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:5935890..5936021 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr11chromosomechr11:5351142..5351255 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11chromosomeChr11:4813753..4813870 +Gossypium aridum (D4) genome ISU_v1n/a
E10chromosomeE10:106554193..106554314 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:5622120..5622294 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1632MONCS1632Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A31.3DC40103View
2TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A89.7DC40103View
3W10 x TM-1, F2:3 (2015)AD_ch20_Dt.10N/A3DC40103View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A25.7DC40103View
5Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A161DC40103View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch20_Dt.10N/A0MON_DC40103View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A35.93DC40103View
8TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A89.7DC40103View
9MGG-293-793, MAGIC (2018)AD_ch20_Dt.10N/A60.9DC40103View
Sequence
>DC40103 ID=DC40103; Name=DC40103; organism=Gossypium hirsutum; type=genetic_marker; length=124bp
ATAAACCCGAAGGAACCATTTTCTTCGTTTTATAGGCAAACACTCAATAA
ATATAAATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGGG
TATATAACTAGGCGGGTAGAGGTT